Amel002078.1
Basic Information
- Insect
- Anopheles melas
- Gene Symbol
- -
- Assembly
- GCA_000473525.2
- Location
- AXCO02016061.1:4914-6551[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.012 0.62 10.4 0.4 2 23 182 208 181 208 0.92 2 10 7.8 4.2e+02 1.5 0.4 6 23 217 234 217 234 0.96 3 10 9.1e-06 0.00049 20.2 0.3 2 21 239 258 238 261 0.88 4 10 0.00073 0.04 14.2 2.7 1 20 268 287 268 290 0.94 5 10 0.024 1.3 9.4 0.2 2 23 294 315 293 315 0.88 6 10 8.6e-06 0.00047 20.3 0.4 1 23 322 344 322 344 0.98 7 10 0.00076 0.041 14.2 2.8 3 21 355 373 353 376 0.93 8 10 0.00078 0.042 14.1 0.6 1 23 383 406 383 406 0.98 9 10 9.9e-06 0.00053 20.1 0.2 1 23 411 434 411 434 0.91 10 10 0.00044 0.024 14.9 1.9 1 23 440 463 440 463 0.97
Sequence Information
- Coding Sequence
- ATGTGGGAAAAATGTCGTTTATGTTTAAAGAAAATAGGTATCAGAAAGGGAGCGTCCATCACCGACGACAAATTCGGCGCCATGCTGAGCCGTGTGTTCACCTTCCCGGTTGCCGTTACCGAATCCGTTTTGCTGGTAAATGTGTGTGCCAAATGTGCGTTGACGGTGCAAAACTTTAACGCCTTTAGTGAAGAGGTCGAGGCAAATCAGAACGTTTTGTTAAGCGAGTTAATCGTGGAGCAGAAAGGACGGGAAGTGGAAGATGTTAAACATGGCCATTCACTGACAAAGCCTGTCCTAGATCAAGAATCTGAAACAAATGAAAAAAAGCCCGTGGAAAAGCTCGCTGATGATGATGATCAGATCACTAGTATGCTGCCCATAGAGGATATGGAAGTGCTGCTAAAAGAACAGCTGGATTATGACTTTTCCTCGGACGACAACAACAGCACAACGCACACCGATGACAAAACCCCGAACAGTCGCAGCAAAAAGCCCGACCTGCACGAGAACGATCGCATCATTATGGAGTTTTTCGAGATGCGCTGCGAGCTCTGCCCGAAACAGGCCGAACAAAGCTTCGATCGGTTCTACACGCTGCAGCGGCACTATCGCGTGGCGCACCAGTGTCGCGGATTTTTGCGCTGCTGCGGCAGAAAGCTTTACCGTCGGTTTCGCGTCATGGAACACATCCAGTCACATCGCGGCACGATCCGGTGCGGGATTTGCGACAAGCCGTTCAAAAGCAAGAGCTACCTGATGCGCCACAATGCCGAGCAGCACGTGGCCGAGGGACCGTCCTTCGCCTGCCAGCACTGTGAGCGAACGTTTCACACCCAGCGGCAGCTGAATCAGCACCTGCCCGCGCACGAAACGACGGTGTGCAAGATCTGCGGCAAAACGGTGAACGTTCGGTACCTGAAGCAGCATACCGCACTGATACACGGCACGGTACGCCAGGGCTACATGTGCGATCTGTGCGGGAAGAACTTTTCCAGCAGCTTGGCGCTGGATCGGCACATCAAGCAGCACCAGGGCATTGAGACGATCGAGAAGCTGGACTGTCCGCACTGTGGCAAGCAGCTGAACGGGAAGTACAACCTGCAGAAGCACGTGCGCTGCATGCATGTGGAGGCGGGCAAGAGCTACCGGTGCGAGGTGTGCGGCCACTTCAGCCCGAACAGTGTGGCGCTGGAGAACCACAAAAAGCGGGTGCACACGGGCGAACACTTTGAGTGTGGGGAGTGTGGCAAGCGGTTCAAGCAGAAGATTTACCTGACGGAGCACGTGGCGGCGCTGCACACGCGCAAACCGCTGTACGCGTGCGAGTTTTGCGAGGCTACGTTCAAGTCGAGGGCGAACTACTACACGCACCGGAAGACCCGGCACCGGGCAGAGTGGGAAGCGCTCAGGGAGGAGAGGAAACAAGGGGAGGGCAAGAGATTGTTTGCCGCGGCGGATGTGATCACTGGCGTCGTATAG
- Protein Sequence
- MWEKCRLCLKKIGIRKGASITDDKFGAMLSRVFTFPVAVTESVLLVNVCAKCALTVQNFNAFSEEVEANQNVLLSELIVEQKGREVEDVKHGHSLTKPVLDQESETNEKKPVEKLADDDDQITSMLPIEDMEVLLKEQLDYDFSSDDNNSTTHTDDKTPNSRSKKPDLHENDRIIMEFFEMRCELCPKQAEQSFDRFYTLQRHYRVAHQCRGFLRCCGRKLYRRFRVMEHIQSHRGTIRCGICDKPFKSKSYLMRHNAEQHVAEGPSFACQHCERTFHTQRQLNQHLPAHETTVCKICGKTVNVRYLKQHTALIHGTVRQGYMCDLCGKNFSSSLALDRHIKQHQGIETIEKLDCPHCGKQLNGKYNLQKHVRCMHVEAGKSYRCEVCGHFSPNSVALENHKKRVHTGEHFECGECGKRFKQKIYLTEHVAALHTRKPLYACEFCEATFKSRANYYTHRKTRHRAEWEALREERKQGEGKRLFAAADVITGVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00102545; iTF_00093655;
- 90% Identity
- iTF_00093655;
- 80% Identity
- -