Aara001677.1
Basic Information
- Insect
- Anopheles arabiensis
- Gene Symbol
- -
- Assembly
- GCA_016920715.1
- Location
- NC:79303811-79305906[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.012 0.59 10.2 0.6 2 23 207 233 206 233 0.90 2 10 7.2 3.5e+02 1.5 0.4 6 23 242 259 242 259 0.96 3 10 8.5e-06 0.00041 20.1 0.3 2 21 264 283 263 286 0.88 4 10 0.00068 0.033 14.1 2.7 1 20 293 312 293 315 0.94 5 10 0.023 1.1 9.3 0.2 2 23 319 340 318 340 0.88 6 10 8.1e-06 0.00039 20.2 0.4 1 23 347 369 347 369 0.98 7 10 0.00071 0.034 14.1 2.8 3 21 380 398 378 401 0.93 8 10 0.00073 0.035 14.0 0.6 1 23 408 431 408 431 0.98 9 10 9.2e-06 0.00044 20.0 0.2 1 23 436 459 436 459 0.91 10 10 0.00071 0.034 14.1 1.3 1 23 465 488 465 488 0.96
Sequence Information
- Coding Sequence
- ATGTGGGAAAAATGTCGTTTATGTTTAAAGAAAATAGGTGCCGGAAAGGGAGCGTCCATCACCGACCACGAATTTGGCGCCATGCTGAGCCGTGTGTTCACCTTCCCGGTTGCCGTCACCGAATCTGTTTTGCTGGtaaatgtttgtttcaaatgtgCGTTGACGGTGCGTAACTTTAACGCCTTTAGTGAAGAGGTCGAGGCCAATCAGAACGTTTTGTTAAGGGAGTTAATGGTGGAGGAGAAAGGTAGGGAATTAGATGATGAAAAGGTAAAGCATACTCAAGTAATCTCATCACGAGAGCTAACTGTGGAGCCAAAAGGACGGGAAGTGGAAGATGTTAAACATGGCCATTCACTGACAAAGCCTGTCCTAGATCAAGAAtctgaaacaaatgaaaaaaagcctGTGGAAAAGctcgctgatgatgatgatgggaccGCCAGTATGCTGCCCATAGAGGATATGGAAGTGCTGCTAAAAGAACAGCTGGATGATGACTTTTCCTCGGacgacaacaacagcacaacgCACACCGATGACAAAACCCCGAACAGTCGCAGCAAAAAGCCCGACCTTCACGAGAACGATCGCATCATTATGGAGTTTTTCGAGATGCGCTGCGAGCTCTGCCCGAAACAGGCCGATCAAAGCTTCGATCGGTTCTACACGCTGCAGCGGCACTATCGCGTGGCGCACCAGTGTCGCGGATTTTTGCGCTGCTGCGGCAGAAAGCTTTACCGTCGGTTTCGCGTCATGGAACACATCCAGTCACATCGCGGCACGATCCGGTGCGGGATTTGCGACAAGCCGTTCAAAAGCAAGAGCTACCTGATGCGCCACAATGCCGAGCAGCACGTGGCCGACGGACCGTCCTTCGCCTGCCAGCACTGTGAGCGAACGTTTCACACCCAGCGGCAGCTGAATCAGCACCTGCCCGCGCACGAAACGACGGTATGCAAGATCTGCGGCAAAACGGTGAACGTTCGGTACCTGAAGCAGCATACCGCACTGATACACGGCACGGTACGCCAGGGCTACATGTGCGATCTGTGCGGGAAGAACTTTTCCAGCAGCTTGGCGCTGGACCGGCACATCAAGCAGCACCAGGGCATCGAGACGATCGAGAAGCTAGACTGTCCGCACTGTGGCAAGCAGCTGAACGGGAAGTACAACCTGCAGAAGCACGTGCGCTGCATGCATGTGGAGGCGGGCAAGAGTTACCGGTGCGAGGTGTGCGGCCACTTCAGCCCGAACAGTGTGGCGCTGGAGAACCACAAAAAGCGGGTGCACACGGGCGAACACTTTGAGTGTGGGGAGTGTGGCAAGCGGTTCAAGCAGAAGATTTACCTGACGGAGCACGTGGCGGCGCTGCACACGCGCAAACCGCTGTACGCGTGCGAGTTTTGCGAGGCTACGTTCAAGTCGAGGGCGAACTACTACACGCACCGGAAGATCCGGCACCGGGCAGAGTGGGAAGCGCTCAGGGAGGAGAGGAAACAAGGGGAGGGCAAGAGATTGTTTGCCGCGGCGGATGTGATCACTGGAGTCGTCTag
- Protein Sequence
- MWEKCRLCLKKIGAGKGASITDHEFGAMLSRVFTFPVAVTESVLLVNVCFKCALTVRNFNAFSEEVEANQNVLLRELMVEEKGRELDDEKVKHTQVISSRELTVEPKGREVEDVKHGHSLTKPVLDQESETNEKKPVEKLADDDDGTASMLPIEDMEVLLKEQLDDDFSSDDNNSTTHTDDKTPNSRSKKPDLHENDRIIMEFFEMRCELCPKQADQSFDRFYTLQRHYRVAHQCRGFLRCCGRKLYRRFRVMEHIQSHRGTIRCGICDKPFKSKSYLMRHNAEQHVADGPSFACQHCERTFHTQRQLNQHLPAHETTVCKICGKTVNVRYLKQHTALIHGTVRQGYMCDLCGKNFSSSLALDRHIKQHQGIETIEKLDCPHCGKQLNGKYNLQKHVRCMHVEAGKSYRCEVCGHFSPNSVALENHKKRVHTGEHFECGECGKRFKQKIYLTEHVAALHTRKPLYACEFCEATFKSRANYYTHRKIRHRAEWEALREERKQGEGKRLFAAADVITGVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00104580;
- 90% Identity
- iTF_00104580;
- 80% Identity
- -