Amel007302.1
Basic Information
- Insect
- Anopheles melas
- Gene Symbol
- -
- Assembly
- GCA_000473525.2
- Location
- AXCO02018993.1:1-4590[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0045 0.24 11.7 0.9 1 23 244 266 244 266 0.97 2 12 9.7e-05 0.0052 17.0 2.0 2 23 269 290 268 290 0.96 3 12 2.1e-05 0.0011 19.1 1.9 1 23 296 318 296 318 0.98 4 12 1.1e-05 0.00057 20.0 3.5 2 23 325 347 324 347 0.96 5 12 0.0017 0.091 13.1 0.5 1 23 357 379 357 379 0.98 6 12 4.3e-05 0.0023 18.1 2.8 2 23 385 407 384 407 0.96 7 12 0.0093 0.5 10.7 0.6 3 23 421 440 420 440 0.97 8 12 1.7e-05 0.00091 19.4 0.9 1 20 447 466 447 469 0.92 9 12 0.00028 0.015 15.6 0.2 1 23 477 499 477 499 0.97 10 12 2.7e-05 0.0014 18.7 3.1 1 23 505 527 505 527 0.98 11 12 0.00014 0.0077 16.4 5.8 1 23 533 555 533 555 0.98 12 12 0.00092 0.049 13.9 3.5 1 23 561 583 561 584 0.95
Sequence Information
- Coding Sequence
- CAATTTTCCTCAACCGGTCATCAACACCTGCAGCAGCAGCAGCACCAGCAGCACGGTTCGGCCGAAGCGCCCTTGGACGGCGGTATGATGCAGGCGAGCAAGATCGAACCGCCGATGGATGTGGACAGCGATAGCGGGGAGGTGATGCCGAAGTTGCCGTTTGCGGACATGATGGTAGCGCGCATGCACGAGCCACCGGGTGCATACGATGAGGTGGGCAGCAGCCACCACCATCACCACCAGCAGCAGCAGCAGCAACAAACGCTGCACCAGCCGTGTGAGACCAAGTACGAGGAAACGGTCGGTACGACGTCCTACTTTGGTGTTGCGACCTGCTCCGCCGTACCGGTGATGCAGCAGCCGACGGACGATCCGGTGCGGCCCAACCGACCGAAACCGTCCGGCAGCGGTGTCGCGCGCACCTACCGCTGTACGCTCTGCGCCAAGCAGGAGATAGAGCGAAAGAGTGAGGCGGCGCTGCGAAGCAGCCGGCTGCTGATGGCGGGCAGTAGCGCTGGCAGCAGCACGACTGTAGTGCTGCCCGGCACAAGCAGCGGGGAGGCGGCACCGGGCCAGCAGCAGCAGCCGCAGCAGCTAGTGCTAGAGCAGCACGTGCAGTTGCAGGTGCAGGTGCAGACCGACGGTGGAACCGTTGCGGCGTTGAGCGCGTCCGCTGAGAGCGCGCTGCTGCCGGCGGCGCACTGCTCGGTAGCGGCACGCAACCGTTCGTACGTGTGCAGCACCTGCAGCCGGGAGTTCGACCGGTTCAACCTGTTCAACGAGCATCTGCTGGAGCATCCGGTGGAGTGTTCCGCATGCGGGCGGCACTTCAAGCAGTGGCGCAACTTTTCGCTCCACATCAAGCGGCACCTCGGCATCAAGGAGCACCAGTGCCGGATGTGCGGCAAGCGGTTCGTCATCAAGCAGAAGCTGATCGAGCACATGCGGGTGCACACGGGGCACGCGCCGATCAAGTGCAAGCTGTGCAACCGGACGTTCAAGCGGTTCTCCAACCTGGCCCAGCACCGGAAGCGCTACCATCTGAACCGCACCGTCGTGAAGGAGGAGTACGTGTGCCAGCTGTGCGGCGAGGTGTTCCACACGATGGCCAAGATGGAGTGGCACAAGGAGACGCACGAGAAGAAGCCAAAATCGTGCCCGTACTGTCGGGAGAAGTTCATACACCGCAACAGCTTGACGCGCCACATCCGGCTGTCGCACACGGACAAGTACGCGAAGCTCGAGAACAAAACCGAACCGTGCAGCATCTGCCAGCAGCCGTACACGAAGACGAGCATGCGGCGCCACCTGGAGACGCACACCAAGGAGCGGATGGCGTACGCGTGCGGTATCTGCAACAAGCGGTTCACCACCAACTGGAACCTGAAGCAGCACAAGTGGACGCACACGAACCCGACGATGAAACCGTTCCAGTGCACGTACTGCCCGAGCGCGTTCGTGCGCGAGTCGGACTTTGTCACGCACGTCAACGCGCACCGGTCGATCCGGCCGTACACGTGCAATCACTGTGGCAGCCAGTTCATCCGGAAGTACAACTGGATCCGGCATACGCGCGAGCACGAGATCGACAAGGGGCACCGGTGCGACGTGTGCGGCCGCCAGTTCCACCGGAAGTACTACCTGACCGAGCACAAGCGCATCCACACGGGCGAGCGGCCGTTCGCGTGCAACATCTGCGGCAAGACGTCCGCGACCAAGACGAACCACAACAAGCACGTGCGGATACATCACGCGCGCGACCCACTCACGGCGGAAGGGTAA
- Protein Sequence
- QFSSTGHQHLQQQQHQQHGSAEAPLDGGMMQASKIEPPMDVDSDSGEVMPKLPFADMMVARMHEPPGAYDEVGSSHHHHHQQQQQQQTLHQPCETKYEETVGTTSYFGVATCSAVPVMQQPTDDPVRPNRPKPSGSGVARTYRCTLCAKQEIERKSEAALRSSRLLMAGSSAGSSTTVVLPGTSSGEAAPGQQQQPQQLVLEQHVQLQVQVQTDGGTVAALSASAESALLPAAHCSVAARNRSYVCSTCSREFDRFNLFNEHLLEHPVECSACGRHFKQWRNFSLHIKRHLGIKEHQCRMCGKRFVIKQKLIEHMRVHTGHAPIKCKLCNRTFKRFSNLAQHRKRYHLNRTVVKEEYVCQLCGEVFHTMAKMEWHKETHEKKPKSCPYCREKFIHRNSLTRHIRLSHTDKYAKLENKTEPCSICQQPYTKTSMRRHLETHTKERMAYACGICNKRFTTNWNLKQHKWTHTNPTMKPFQCTYCPSAFVRESDFVTHVNAHRSIRPYTCNHCGSQFIRKYNWIRHTREHEIDKGHRCDVCGRQFHRKYYLTEHKRIHTGERPFACNICGKTSATKTNHNKHVRIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101109;
- 90% Identity
- -
- 80% Identity
- -