Amel003366.1
Basic Information
- Insect
- Anopheles melas
- Gene Symbol
- -
- Assembly
- GCA_000473525.2
- Location
- KI923885.1:272-2167[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-07 0.00016 21.1 0.1 5 35 267 297 266 305 0.90 2 4 0.027 39 3.9 0.0 6 26 362 382 360 393 0.90 3 4 4e-08 5.6e-05 22.6 0.0 6 38 453 484 449 489 0.90 4 4 5e-13 7.1e-10 38.3 0.1 2 35 589 623 588 631 0.90
Sequence Information
- Coding Sequence
- ATGGCACAGTCATCTTCCGGCCAGACGAAAACGATGCTAGTATGGCTCGACTACAGCCGGCACATGCTGAGCACGCTGCAGGACATCTACGCCGACCAGCAGTATACGGACTGCCGGCTGGTGGTGCCCGACGGTGAGCTGTACGCGAACCGTCCGATACTGAGCATGGCGTCCGGGCTGTTCGAGGCAATCTTCACCAGCATGGTCACGCTCACGATGGACCCGTCCACGGTGCTCATACCGGACATGACGTTCGCCAACCTGCAGCGCGTCGTGCAGTTCATCTACACTGGCCGGGTGACGCTGCAGCCGGACGAGGTCGTTCCGTTTATGGAGGCGTGCGGGCTGCTGCAGCTCCGGGGCGTCGAATGTTGCGGCAACCGCACGATGGGCATTTACATTGACGAATCGGGCCCGGGAGCTACGGCGGAGGACGGTGATCCGTTCGCAATGGCCCCAGAAACGGATCCGCTGCACATCGATCACACCCGGTACCCTGGGGCGGTGGAAAAGGCTGAGCCACCACCATTAAAACTAATTGAGCCGAATCTCGAATCTACGGGCGAGTTTTTTCCGGGCAATATCTGCAAAGAAGAGTTGATGGTATCGGACGAGGACAGTGTGGAGGAGGAGGAGGAGGAGGAGGGTGATAAAAGTGACGCGGGCGAGGACAGCTCGATGGACGACAGCACGGACAGCGAGCAGGATGTGCAGCGGTGGATGGCGCTGGTGAAGGAGGTTGCAGTGGTCGACACGAGCCACCCGGGAGCGCCGAACTTCACGCCCTACCAGAACTGTCTGAAACAGGCCATCGTAGCGGTCATTAGCGGGAATGTTTCGCCCAGAAGAGCGGCCGCCCGGTACAACGTACCCGCGAGCAGGCTGGTGCGCTGGACGCAGAAGGTAAAGCGAGCGATGAAAAAGCAACCAGAGACGGTAACTGCCAATGTGGCGCAGCTGGTTGCCGCATACATTGACCGGAGCATACAGGAGTTCAAGCAGCTGCTAGAAACGAGCGATGCGGACGCACGTGTCAGCTTGCTGAGCGACCCATCAAATGCGCTGATGTACGACGTGCGGATTATGCTCGCGATCCACGACATCATGTACACCGGGATAAGCCTGCGGGAGGCGGTATCGCGGTACAAAACCAGCCTCGGTTTGCTGAGAAACCGGCTGTACAATCTAAAGAGTCAGCTAATAACGAACCATTTTAAGTCGTTCGGCATCAGATTGAAAAGTGCGGACAAACAGACAAACGAGCGAAAGGTGGCAGGGGCGAAGCGTCGAAGGTTTGAGACGGAGTCGGGGAAGATTTTGAAAACAGCCGATCCCTCCCGGTACGAGGAGTGTGTGGCCAAAGCGCTGGAGGCGATTGGTTGCGGTCTATCTATCCAGCAAGCCGCAAACCACTTTCGCATACACAAAAGTGCTCTGTGGCGGCACGCAAAGGCCGAGAACATAACCTTTCCGCAGGAAAGGACAGTTATAAGGAAGAAAGCAGCGACAAAAAAAGTTAAACCGAGCGGTGGCGGTTCGATCGCTGCCTCCTTCACTACTACGAACAGTTGCCCCATAGTGCCGAAGCTGGTACCGTTTGGAAGCACTGGAGCCGTCACCACCGCCGAGCGCGTTAGGGATCGTGCAGGAGGTGGTGAGATCGATCTAGCACCGGCTAGTACGGCGGCTCCTCCGATTGCTGCGCCGAGTTTGCTTCCCCTGCCCAAGTTGGTTCCGATTTCGAGCAGCTCACTGCCGGAGTACGAGGAGCGGATGGAGGCAGCAATCGCTATGATATCGAATCAGAAAATGAGCTACCGGGAAGCGTCGGTAAAGTACAACATTCCCAAGGCGACACTGTGGAAGAAGATAAGTAAGATGGAGCCGAAAAAGTAA
- Protein Sequence
- MAQSSSGQTKTMLVWLDYSRHMLSTLQDIYADQQYTDCRLVVPDGELYANRPILSMASGLFEAIFTSMVTLTMDPSTVLIPDMTFANLQRVVQFIYTGRVTLQPDEVVPFMEACGLLQLRGVECCGNRTMGIYIDESGPGATAEDGDPFAMAPETDPLHIDHTRYPGAVEKAEPPPLKLIEPNLESTGEFFPGNICKEELMVSDEDSVEEEEEEEGDKSDAGEDSSMDDSTDSEQDVQRWMALVKEVAVVDTSHPGAPNFTPYQNCLKQAIVAVISGNVSPRRAAARYNVPASRLVRWTQKVKRAMKKQPETVTANVAQLVAAYIDRSIQEFKQLLETSDADARVSLLSDPSNALMYDVRIMLAIHDIMYTGISLREAVSRYKTSLGLLRNRLYNLKSQLITNHFKSFGIRLKSADKQTNERKVAGAKRRRFETESGKILKTADPSRYEECVAKALEAIGCGLSIQQAANHFRIHKSALWRHAKAENITFPQERTVIRKKAATKKVKPSGGGSIAASFTTTNSCPIVPKLVPFGSTGAVTTAERVRDRAGGGEIDLAPASTAAPPIAAPSLLPLPKLVPISSSSLPEYEERMEAAIAMISNQKMSYREASVKYNIPKATLWKKISKMEPKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00104498;
- 90% Identity
- iTF_00100894;
- 80% Identity
- iTF_00104498;