Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_943734865.1
Location
CALSEK010000173.1:46424-51726[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-14 9.7e-12 44.6 0.2 3 44 691 732 689 734 0.95

Sequence Information

Coding Sequence
ATGGAAATGGTGTCGCTGGGGCCGAAAAAGGATGGAAATCCTAATGCGGAGTTTTTTACCGCCCCGGAAACGCTACAGGGATTCGAAACGGTGCGGCTGTGGTTGCAGAAACACTTCAAAAAGTTTCTTGCACCAGATCCACCGACGAAGGAATCTTTGGCACATTTGATCATACAGTTTATACAGTATCAGGAAGCTAAGCTCGGTAAAAACTCGCAAGATCCACCAACAACCCGCTTGCCGATACGATGCTTCATGGATTTCAAACCAGGCGGTGCTCTGTGTCACATTCTGTCCACAATGTACCGCTACAAGGCGGAACAGCGCTGGCGAAAGTTTGACTTCACCGTCAACAAGAACCCGATGCGCAAGGATCCGATTGGACAGATGGTGCTGGACATCGAGACAGCGCTGATCGAAGCGGAATGTATGCGGCTTCCGATCGTGTACATTCGACCGGAGGTGGATCGTGCCACGGCGAACAAGATCACTGACATCGTGACGAACCATCAGGGTGAGATAACGGCGGACGAGGAGGAAGCAACGCACATCATCTATCCAGTAATCGATCCGTTGCCGGAGGATTACGCTCGTCCCACGTTCCGGCGTGACAAACACGTCATGATTCACTGGTATTACTTCCCGGAATCGTACGATACCTGGGTGCCGAATTCGTTCGATCTACCCGACAACGTACCCGAGAGTCCACCGTCCCCAGCTGAACGTTGGCGTGTGTCCGCCTCGTGGGTGATTGATTTGGACGAGTACAACGAGTGGATGTCAGAGGAAGATTACGAAGTGGATGAGGTAGGCCGGAAGAAGGTACATCCGCATCGGCTCGGCGTCGAAGATCTAATGTCGAGTGTTGGCGGTGGCGGTGGATCGGAAGATAAGGTGAAGAAAACACCCAAAGTGGTCAACTCAAAGCGTAAACGATCGCCTTCACCCGCTGCGGGTAAGGGTGGCAAGCGGAAGAGCTACCGTTCGCCGGCTGCGTCAGCGGCAGCATCTTCGTTCCAGAAAAAACCGCGTGCCGATGACGAAGAATCGGAAGACCTCACCAAGGACATGGACGATCCGACACCGGAGACGAACATCACTGAGGTGAAGCCAAATATGGGCAGCTCGGCAACGGGCCCTGCCACACCGCAACCGAAGCGTGACCCCGACATGATGCCGATGAAGTACGCCACCGTGACTGATCTGGACGATGAGATGGAGCGCGGTGTAAATGCGTCCGGTGCAGGTGGCAGTGGTTCGGGCACGGGAGGTGGCGGTAGCGGTGGCTCGGGAGCCGGTGTCGGTGGAGACGACAGTCAGGCGGGCAAAACGAGCGACAGTAGCAATACGCAGGACTTCCCTGTCGGTGGGAAAGACGATCTGGAGGATAATGTGACAGAGCAAACGCACCACATCATCGTACCGTCATACTCGGCTTGGTTCGATTACAATTCGATACACGTGGTGGAGAAACGCGCACTGCCAGAGTTTTTCAACGGCAAGAACAAATCGAAGACGCCGGAAATTTACATGGCCTACCGGAACTTTATGATCGACACCTACCGACTAAATCCGACCGAGTATCTCACCAGCACCGCCTGTCGCCGCAACTTGGCGGGCGATGTGTGTGCGATCATGCGCGTTCACGCGTTCCTGGAGCAGTGGGGACTGATCAACTATCAGATCGATGCAGATTCGAGACCCACACCGATGGGACCGCCACCCACATCCCATTTCCACGTGCTGAGTGACACACCGTCCGGACTGCAACCGATCAATCCACCTAAAACGGCACAACCATCGGCGGCCAAGAATTTGCTGGATTTGGACAAAAAGAATGCAACGCTTGGCGAGAAGAAGGATGAGTTAATCCCTGGAGCAGCCGCTGGTGGTGCTGTTCCGGGTGCAAATGGTGGCGCACCGGGCAGTTTGATCGGTCCGGATGGTATTAAGGTCGAGCAGGGCACAATTCCAACGGCCGATCCGAACGGACAGTTCGGATTGCGGTTGGATCAGTACGCGAAGAAACCGGCCGCAATGCGCAACAAGACGGCGGCCAGTATGACACGCGAGTGGACCGAACAGGAAACGTTGCTACTGCTGGAAGGGCTCGAAATGTACAAGGACGACTGGAACAAGGTGTGCGAGCACGTCGGCTCACGGACGCAGGACGAATGTATTCTGCACTTTTTGCGACTCCCGATCGAGGACCCGTACCTGGAGGATGACAACACATTCCTGGGTCCACTTTCGTACCAACCGATCCCGTTCAGCAAGGCGGGCAATCCGATCATGTCGACTGTAGCGTTTTTGGCGTCCGTGGTCGATCCACGCATTGCGGCTAGCGCTGCCAAGGCTGCGATGGAAGAATTTGCAGCAATCAAGGATGAAGTTCCGGCTTCCATGATGGATGCACATCTGAAGAATGTGGAGAAATCGAGCTTTGGTGGAAAGTTTGACCCAAATGCTGGGCTGGCAAACAGTGGAATTGCAGGTACGGGCCCGGACAAGGATAAGGAAGAGGATTCGGATAGCAAATCGGCTTCGACGGCAGCAGCTAGTGGCAGCGGTACGGCGACGACGACTCCTGTCGTTGGTGGTGCGTCATCGGCTACACCAGCCACACCCAGTGCGGATGTGGAGATGAAGGATGTGTCCAAGAAGGATGATGCCGACAAAGACAAACCTTCTGAAGAGACAACCACTAAATCGCCTGATTCCGATGCCACAGCGACGGTTGACGCTAACAAACCAACGGATGGCACAAGTACGGGGACTGCACCTTCGGCCGATAAGGATAAGGAGGTTAAGGATGGTACTGCTGCTTCCGGTGGATCATCCATGACTGCTGGCGGCGGCACGGCCGAGACTGGATCGGCCACATCAGTGTCCACCGTTGCCAAAGAGAACGGTGGTTCCACCGATCCGAAGCTTTTCAACGAAGGAAACCTGCAAGCGGCGGCTGCAGCTGCACTGGCAGCGGCTGCCGTCAAGGCGAAGCATCTGGCCGCGGTTGAGGAGCGCAAGATCAAGAGTCTGGTAGCGCTGCTCGTCGAAACGCAGATGAAAAAGTTGGAAATCAAGCTGCGCCACTTCGAAGAGCTCGAAACTACGATGGAACGCGAACGGGAGGGTCTCGAATATCAGCGGCAACAGTTGATCCAGGAACGCCAGCAGTTCCATCTGGAGCAGCTAAAGGCGGCCGAGTTCCGTGCCCGACAACAAGCCCACCAACGCTTCCAGCTCGAACAAGGCcaatggcagcaacagcaggcccaagcacaggcacaagcacaagctcaggctcaacagcagcaccagcagcagcagcagcagcaacaacaacaacagcaacaacacggtccagcaggaacgggtccgggacagttgccaacatcaggaacagcaccgccacaacccgcaggaggagcaccgggagtggcgacagcattaccgggcggtcaacatcatctcaccgccaatccgggagctaACACTCAAAAGCCGCCATCTATCGTTGGTGGCCCGGGGATGGTGCCGGGAGCGCCTGGAGCAGTTCATGCCCCCAGCAGTCATCCACCAACGACCGTACCAGCAGCAGCAGCAGCAGCATCGACATTGCCGGCGACAGCATCCTTACCATCGGTCAACCAAGGTTCAGTTCACGCACCGCAGCCGGGAACCGCGGTGGGACCAGCAGGAGCACCAGCAATGCCGGCAGCGTGCTCCAACGGTATCCCCCCTATTACCTCCACCCCCAGCTCTACCCAGCCGCCCTCTACGAATCCTACCGACGGTATTACGCCAAGTAGCATCATGCCAACGGCGCTGGGACCACCAGTTCCATCTCCTTCGCCGGCCGACCCGACCGCGACCCATCCAGGCACCGTCGGTGTCCCGATGGTACCGCCCCCGTCTGGCCCTGGCGGACCACAGCAACAACCGTCGGAACAGCAGCATGCTGGAGGACCACCTCCAACCGGGTCGATCGAACCGTCGGCCACAGCGGGGGGAGACGCAGCAACGACGATGATGGTGACGAATCACCCGTCGCCATCCTCCGAGTCCCACGGAGAGGTGGGACAGGTGACCGCAACGCCACCGGAAACAGCCGCTGTAGCCGTGAGTGAACAGCAGTCGGAGCAGCAGCAGCAGCAGCAACAATCAGGTGCGCCCGGTGAAGGGCAGGTGGCCGTCGCACCACCATCATAA
Protein Sequence
MEMVSLGPKKDGNPNAEFFTAPETLQGFETVRLWLQKHFKKFLAPDPPTKESLAHLIIQFIQYQEAKLGKNSQDPPTTRLPIRCFMDFKPGGALCHILSTMYRYKAEQRWRKFDFTVNKNPMRKDPIGQMVLDIETALIEAECMRLPIVYIRPEVDRATANKITDIVTNHQGEITADEEEATHIIYPVIDPLPEDYARPTFRRDKHVMIHWYYFPESYDTWVPNSFDLPDNVPESPPSPAERWRVSASWVIDLDEYNEWMSEEDYEVDEVGRKKVHPHRLGVEDLMSSVGGGGGSEDKVKKTPKVVNSKRKRSPSPAAGKGGKRKSYRSPAASAAASSFQKKPRADDEESEDLTKDMDDPTPETNITEVKPNMGSSATGPATPQPKRDPDMMPMKYATVTDLDDEMERGVNASGAGGSGSGTGGGGSGGSGAGVGGDDSQAGKTSDSSNTQDFPVGGKDDLEDNVTEQTHHIIVPSYSAWFDYNSIHVVEKRALPEFFNGKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDADSRPTPMGPPPTSHFHVLSDTPSGLQPINPPKTAQPSAAKNLLDLDKKNATLGEKKDELIPGAAAGGAVPGANGGAPGSLIGPDGIKVEQGTIPTADPNGQFGLRLDQYAKKPAAMRNKTAASMTREWTEQETLLLLEGLEMYKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDDNTFLGPLSYQPIPFSKAGNPIMSTVAFLASVVDPRIAASAAKAAMEEFAAIKDEVPASMMDAHLKNVEKSSFGGKFDPNAGLANSGIAGTGPDKDKEEDSDSKSASTAAASGSGTATTTPVVGGASSATPATPSADVEMKDVSKKDDADKDKPSEETTTKSPDSDATATVDANKPTDGTSTGTAPSADKDKEVKDGTAASGGSSMTAGGGTAETGSATSVSTVAKENGGSTDPKLFNEGNLQAAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRARQQAHQRFQLEQGQWQQQQAQAQAQAQAQAQQQHQQQQQQQQQQQQQHGPAGTGPGQLPTSGTAPPQPAGGAPGVATALPGGQHHLTANPGANTQKPPSIVGGPGMVPGAPGAVHAPSSHPPTTVPAAAAAASTLPATASLPSVNQGSVHAPQPGTAVGPAGAPAMPAACSNGIPPITSTPSSTQPPSTNPTDGITPSSIMPTALGPPVPSPSPADPTATHPGTVGVPMVPPPSGPGGPQQQPSEQQHAGGPPPTGSIEPSATAGGDAATTMMVTNHPSPSSESHGEVGQVTATPPETAAVAVSEQQSEQQQQQQQSGAPGEGQVAVAPPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00093396;
90% Identity
-
80% Identity
-