Agam010341.1
Basic Information
- Insect
- Anopheles gambiae
- Gene Symbol
- -
- Assembly
- GCF_000005575.2
- Location
- NT:32360184-32362091[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-07 0.00066 18.8 0.0 5 33 271 299 270 308 0.89 2 4 0.03 47 3.3 0.0 6 26 366 386 364 387 0.87 3 4 5.3e-09 8.3e-06 24.9 0.1 2 39 453 489 452 493 0.92 4 4 3.6e-13 5.7e-10 38.2 0.1 2 35 593 627 592 635 0.90
Sequence Information
- Coding Sequence
- ATGGCACAGTCATCTTCCGGCCCGACGAAAACGATGCTAGTATGGCTCGACTACAGCCGGCACATGCTGAGCACGCTGCAGGACATTTACGCCGACCAGCAGTACACGGACTGCCGGCTGGTGGTGCCCGACGGTGAGCTGTACGCGAACCGTCCGATACTGAGCATGGCGTCCGGGCTGTTCGAGGCAATCTTCACCAGCATGGTCACGCTCACGATGGACCCGTCCACGGTGCTCATACCGGACATGACGTTCGCCAACCTGCAGCGCGTCGTGCAGTTCATCTACACCGGCCGGGTGACGCTGCAGCCGGACGAGGTCGTTCCGTTTATGGAGGCGTGCGGGCTGCTGCAGCTCCGGGGCGTCGAATGTTGCGGCAACCGCACGATGGGCATTTACATTGACGAATCGGGCCCGGAAGCTACGGCGGAGGACGGTGATCCGTTCGCAACGGCCCCAGAAACGGATCCGCTGCACATCGACCACACCCGGTACCCCGGGGCGGTGGAAAAGGCTGAGCCGCCACCATTAAAACTTATTGAGCCGAATCTCGAATCTACGAGTGAGCTATTTCCGGGCAATATCTGCAAAGAAGAGTTGATGGTATCGGACGAGGACAgtgcggaggaggaggaggaggaggaggaggaggaggagggtggTAAAAGTGACGCGGGCGAGGACAGCTCGATGGACGACAGCACGGACAGCGAGCAGGATGTGGAGCGGTGGATGGCGCTGGTGAAGGAGGTTGGAGTGGTCGACACGAGCCACCCGGGAGCGCCGAACTTCACGCCCTACCAGAACTGTCTGAAGCAGGCCATCGTAGCGGTCATTAGCGGGAATGTTTCGCCCAGAAGAGCGGCCGCCCGGTACAACGTACCCGCGGGCAGGCTGGTGCGCTGGACGCAGAAGGTAAAGCGAGCGATGAAAAAGAAACCAGAGACGGTAACTGCCAATGTGCCGCAGATGGTTGCCGCATACATTGACCGGAGCATACAGGAGTTCAAGCAGCTGCTAGAAACGAGCGATGCGGACGAACGTGTCAGCTTGTTGAGCGACCCATCAAATGTGCTGATGTACGACGTGCGGATTATGCTCGCGATCCACGACATCATGTACACCGGGATAAGCCTGCGGGAGGCGGTAACGCGGTACAAAAACAGCCTCGGTTTGCTGAGAAACCGGCTGTACAATCTAAAGAGTCAGCTAATAACGAACCATATTAAGTCGTTCGGCTTCAGATTGAAAAGTGCGGACAAACAGTCAAACGAGCGACAGGCGGCAGGGAAGAAGCGTCGAAGGTTTGAGACGGAGTCGGGGAAGATTTTGAAAACAGCCGATCCCTCCCGGTACGAGGAGAGTGTGGCCAAAGCGCTGGAGGCGATTGGTTACGGTCTATCTATCCAGCAAGCCGCAAACCACTTTCGCATACACAAAAGTGCTCTATGGCGGCACGCAAAGGCCAAGAACATAACCTTTCCTCAGGAAAGGACAGTTCTAAGGAAGAAAGCAGCGACAAAAAAAGTTAAACCGAGCGGTGGTGGTTCAATCGCTGCCTCCTCCTCTGCTACGAACAGTTGCCCCGTAGTGCCGAAGCTGGTACCGTTTGGAAGCACTGGAGCCGTCACCACCGTCGAGCGCGTTAGGGATTGTGCAGGAGGTGCTGAGATCGCTCTAGCACCGGCTAGTACGGCGGCTCCTCCGATTGCTGTGCCAAGTTTGCTTCCCCTGCCCAAGTTGGTTCCGATTTCGAGCAGCTCGCTGCCGGAGTACGAGGAGCGGATGGAGGCAGCAATCGCTATGATATCGAATCAGAAAATGAGCTACCGGGAAGCGTCGGTAAAGTACAACATTCCCAAGGCGACACTGTGGAAGAAGATAAGTAAGATGGAGCCGAAGAAGTAA
- Protein Sequence
- MAQSSSGPTKTMLVWLDYSRHMLSTLQDIYADQQYTDCRLVVPDGELYANRPILSMASGLFEAIFTSMVTLTMDPSTVLIPDMTFANLQRVVQFIYTGRVTLQPDEVVPFMEACGLLQLRGVECCGNRTMGIYIDESGPEATAEDGDPFATAPETDPLHIDHTRYPGAVEKAEPPPLKLIEPNLESTSELFPGNICKEELMVSDEDSAEEEEEEEEEEEGGKSDAGEDSSMDDSTDSEQDVERWMALVKEVGVVDTSHPGAPNFTPYQNCLKQAIVAVISGNVSPRRAAARYNVPAGRLVRWTQKVKRAMKKKPETVTANVPQMVAAYIDRSIQEFKQLLETSDADERVSLLSDPSNVLMYDVRIMLAIHDIMYTGISLREAVTRYKNSLGLLRNRLYNLKSQLITNHIKSFGFRLKSADKQSNERQAAGKKRRRFETESGKILKTADPSRYEESVAKALEAIGYGLSIQQAANHFRIHKSALWRHAKAKNITFPQERTVLRKKAATKKVKPSGGGSIAASSSATNSCPVVPKLVPFGSTGAVTTVERVRDCAGGAEIALAPASTAAPPIAVPSLLPLPKLVPISSSSLPEYEERMEAAIAMISNQKMSYREASVKYNIPKATLWKKISKMEPKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00104498;
- 90% Identity
- iTF_00100894;
- 80% Identity
- iTF_00102477;