Afun005806.1
Basic Information
- Insect
- Anopheles funestus
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig1:40043184-40045935[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8 1.1e+02 3.3 0.4 1 10 48 57 48 64 0.85 2 13 0.0002 0.012 15.8 1.0 2 23 339 360 338 360 0.97 3 13 2.7e-06 0.00017 21.6 0.7 2 23 367 388 366 388 0.97 4 13 0.3 18 5.8 5.2 1 23 398 420 398 420 0.96 5 13 0.71 43 4.6 0.0 3 23 445 472 443 472 0.83 6 13 1.5 93 3.5 0.8 2 23 479 500 478 500 0.71 7 13 4.8e-07 2.9e-05 24.0 2.5 1 23 538 561 538 561 0.96 8 13 0.033 2 8.8 3.3 3 23 568 588 566 588 0.94 9 13 2e-05 0.0012 18.9 2.2 1 23 593 615 593 615 0.94 10 13 0.0012 0.073 13.3 0.2 2 23 624 646 623 646 0.97 11 13 0.00076 0.046 13.9 0.7 2 20 653 671 652 673 0.94 12 13 4.4e-05 0.0027 17.8 0.4 1 23 684 706 684 706 0.99 13 13 0.00047 0.028 14.6 2.6 1 23 712 735 712 735 0.98
Sequence Information
- Coding Sequence
- ATGGAGCAATTCGTGAATTGTGTGCTGTGCTTAACCACCGAGCCCGACAGCTTTCTCAAAGTGTACAGCGATGAAAAGCAAAGCACCGATATAGCATCCGTAATAACAAAACATCTTTGGCTGAAGCCGACCACCGATTCTTACGTGTGTAATGAATGTTGGAAAAGTTTAAACGAGTTCCATGAGTTTTACAACAGGCTAGAGAACATACACTACCCCCCGGATCCAGAAGATTCGTCGTGCAACGCAAAAGACATCAGACAATATCTGTTCGAATTTCATCCGGTAGAAGATGTGAAAATAGAAGAATTATCTCAAGACGCAGAGCAGTTGGAAGAAATCGAGTATGAATATTTGGAGGACTGTAACGATGAAAGCGTAGACAATGAAACTAAACCTCGGGGCAGCAGCCGGCCCAAAAGGGCCAGTGCTGCACAGGCGAGCTATAAAATGGAAGCGACAGATGCAGAGTGGGAAAAGGATTATCTGGCCACAAACGACGATGAGTATGACGATGACGAAAATGATGAGGATTACGATGCAGACATGAAGGACGAAGCAGACTATCTGGAATCGGTTAATGATGATGGTGACGTTATTAACTACGACAACCAGGACGTTAAACCGGATGTAAACGTCAAAAAGGAAATCATTGCACCGCCGAAAAGAGGCAGAGGTCGACCACCGAAAATAAAAACAGAAGAAGTCGTAAGTAAACCGGAACCGAAAAAGTTACGTCGACGGACCCAAAGAAGGAAGGCATCCATTACCAGCAGCGATTCGGAGCTGGCATCCGACTTTGACGACATGATCGATAGTGACGATTGGAAAAAGTATGGCAACGCGTCGAAGCGAAAATCGAGAAAATCGCTCGGCTTTCGGGAGCTGCAGGAAAAGATATTTTCATACGTTAATGAATTTATCTGCTATTACTGCCCGGAGAAGGTCGTTTTCGAACGTTTTCATCATGCGAATCTCCACTACAAGAAAGTTCACAATGAGCCAGCCTTTCTAAGGTGTCCGAAGTGTGGCAGGAAATGTTTCACGCCCGGTGGATTTGTGAGCCACATGGAGACACACGAGGATCCGGAGCGAAATAAATGCAACATTTGCGGTAAGGTCACGGATCAACAAATCACGCTTAAGAAGCATATGCGAGCGCATCAGGATAAGCTCGAAAAGGACTTCCCCTTCCCGTGCCATCAGTGCACACGCCGCTTCGAGCACGAGGAGAAACGGGACAAGCACGAGCGGTTGCATGGCCGGAAGGTAGTTATCAAGAAGGAAAAGGGTCGAGATCTGGAGCTGCTTGAATTCTACAAGCGCATCTACTGTGACATCTGCGAAGAGCAGAGCCCCGAATCGACCTCGTTCGACAACTTCTGGGATCTGAAGGTGCATATGAGCGGGGAGCACAACAAAACACCCTACCTAAAGTGTCCACTATGCGGCAAGAAGAATGCTTGCCGCCAGCAACTAATGGTACACGTCGATGTTCATAACAACCCGGAACACTATCGGTGCGAAGTATGTAAAGAAATTCATCAAAATCTAGACAAACACATGATCAAAGCTCATACACCGGAAACGTCGTTACCGGATGAGAAGAATTACAGCTGCGAGCACTGCGGTAAAATGTTCAAATATCAAACAAACCTTCGAAGTCATATCGATCGTGTCCACGGGGTAAAGGATGTGTGCTGTGACATCTGTAACAAATATTTCAATCATAAAGCTCTGAGTGCCCACAAACGTTCAGCACACACCGATGAGATGTTCATGTGCGAACATTGTCCGAAAATGTTCAAAACGCGCAGCGGTCTCGAATCGCACAAGAGTGACCACGATGAAACGCTGCGCAAATCGGTCAAGTGTACGATTTGCGGTAAGGAAATGCGTCGCGGTGCCAGCATGGCTAAGCACATGAAAACGATTCACTCACAGGAAGATCCGGTCAAGTGTGATCTGTGCGGTAAGATCTTCCGCACCACGTTCCACATGTTACGGCACCGGGCAAACACGTGCTCGGCCACAATTGATTCTCGTCCGTACAAATGTGAAGTGTGCGGTAAAGGTTTCGCCATGAAACTTACGATGACTGAGCATATGACGACGCATACGCGCACCAGCTTGTATCAGTGTGCGTTCTGCTTCAAAACGTTTGGTTACATTTCGAATCTATACAAACATCGGAAAAAGGCACATCCTCTCGAATGGCAAGAGGTACAGGCAAGGCCGGAACAGGGCATCGCAACCGTAATCGAAATACGTAATTGA
- Protein Sequence
- MEQFVNCVLCLTTEPDSFLKVYSDEKQSTDIASVITKHLWLKPTTDSYVCNECWKSLNEFHEFYNRLENIHYPPDPEDSSCNAKDIRQYLFEFHPVEDVKIEELSQDAEQLEEIEYEYLEDCNDESVDNETKPRGSSRPKRASAAQASYKMEATDAEWEKDYLATNDDEYDDDENDEDYDADMKDEADYLESVNDDGDVINYDNQDVKPDVNVKKEIIAPPKRGRGRPPKIKTEEVVSKPEPKKLRRRTQRRKASITSSDSELASDFDDMIDSDDWKKYGNASKRKSRKSLGFRELQEKIFSYVNEFICYYCPEKVVFERFHHANLHYKKVHNEPAFLRCPKCGRKCFTPGGFVSHMETHEDPERNKCNICGKVTDQQITLKKHMRAHQDKLEKDFPFPCHQCTRRFEHEEKRDKHERLHGRKVVIKKEKGRDLELLEFYKRIYCDICEEQSPESTSFDNFWDLKVHMSGEHNKTPYLKCPLCGKKNACRQQLMVHVDVHNNPEHYRCEVCKEIHQNLDKHMIKAHTPETSLPDEKNYSCEHCGKMFKYQTNLRSHIDRVHGVKDVCCDICNKYFNHKALSAHKRSAHTDEMFMCEHCPKMFKTRSGLESHKSDHDETLRKSVKCTICGKEMRRGASMAKHMKTIHSQEDPVKCDLCGKIFRTTFHMLRHRANTCSATIDSRPYKCEVCGKGFAMKLTMTEHMTTHTRTSLYQCAFCFKTFGYISNLYKHRKKAHPLEWQEVQARPEQGIATVIEIRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00093670;
- 90% Identity
- -
- 80% Identity
- -