Afon013253.1
Basic Information
- Insect
- Anopheles fontenillei
- Gene Symbol
- -
- Assembly
- GCA_008817895.1
- Location
- VTWG01019699.1:4453-6812[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 0.63 10.3 2.4 6 23 247 264 247 264 0.99 2 12 0.1 5.7 7.3 0.2 1 23 270 293 270 293 0.88 3 12 3.1e-05 0.0017 18.4 0.7 1 23 301 323 301 323 0.95 4 12 0.0002 0.011 15.9 1.5 2 23 332 353 331 354 0.93 5 12 1.6e-05 0.00093 19.3 0.8 1 19 462 480 462 485 0.94 6 12 0.0002 0.011 15.8 0.9 1 23 493 515 493 515 0.95 7 12 0.022 1.3 9.4 2.6 3 23 525 546 523 546 0.96 8 12 0.00057 0.032 14.4 0.2 2 23 553 574 552 574 0.96 9 12 2.3 1.3e+02 3.1 7.1 1 23 584 607 584 607 0.96 10 12 0.0016 0.089 13.0 1.9 2 23 614 635 613 636 0.94 11 12 0.00017 0.0097 16.0 0.5 1 23 642 664 642 664 0.97 12 12 0.024 1.3 9.3 1.4 1 23 670 693 670 693 0.91
Sequence Information
- Coding Sequence
- ATGGACACTGGAAGAGTGGAGCCGGAGCCGGTTAGCTGCGATCAATGCCTGCTGTGTCAGTTAAACAGTACCGATCGAAATTTGGTAACCGAGCGGCTTGACACCGGCCAAGGCACCGTAGCGGATGTTATCTGTAAACATTTTTGGCTTTCGGCAACGACATGCACAGGCCGATACATCTGCACCACCTGCTGGGATGTGACGTATTCGTTTCACAAATTCTACCTCGAAGTGGAACGGTTGCATTCGGCCGCGGTTAAGCAAGAGCCACCAGCTGCACCAACCCAACCAAAGCAGCAATCGGACACAACGAAAGCCGACCAGCTCGTCTGGCTGAACGAGGGCAGCACGCTCATCACGAACGTGAACGAAGTTTTCGTGAAGGAGAGCTTACCAGAAAGCGACGATGAACCGGCCGAAGCGGACGAAGAATCCGACGAGGATGCAAACATTCCATTGGCAACGCTCAAGCAGGCAGCGAAACCGTCCGCCACGAAACCGCTCGTACCTCTGCAGCAGGATGGCGACGGCACGGCAGGAAACGCTCAATTCCCCGGGGTAGGATTGTCCTTGTGCCGCATTAGCGGCAGTTCGCTGGAGCTGCTATGCCACGATTGCTATCGGAAGTCGAACAATGCGAACAGCAGCGAGCGAAGCAAGGAGGGAGCGCGCTTTACCTTTGCCGCACTGCTGAAGCACTACCGGCAGGTACACGGCAAGCCGGGGTACGCGGTGTGCTGCAATCGCAAGTACACGCGGCGACGGTCGCTCAAGATGCATCTGCAGACGCACGGTCGGAAGTTGGTGTACCGGTGCGTGCCGTGCGGCATCAAGTTCCGGAAGCAGGAGTCGCTGGACGAGCACAACCTGCTGATCCACACGTCGGAGGAGGAGAAGCGGTACCGGTGCGACAAGTGCGACAAAGCGTTCGCCACGGAGCATCTGCTCAACTCGCACGGCCTGTGGCATGAGAATGTGGCCAGAAAGAACATCACCTGCAGCGTGTGCAACATATTCTTCACCAGCCAACCGTCGCTGAAAAAGCATCGCGCCCTGCACCACCCTTCCATGGAGAGCAGCGATGTGAGCGTACCCTCCACCAACGGCAGCACTGCAGAGGCCGACGATGAAAAATTAGTCGCTTCGCAATATCGCACCCGCATTTCGGCCACAGAAATCGGCGAACAGGAGAAGCTGATCAAGCGCCACTGTCTGCTGCACTGCAGCCGGTGCGCCTTCTTCGGCGAAAGCTTCACCCAGCTCAAGGAGCACGCGGCCGAGGCGCACGGGCTGCGCAGCTGCGACGTCGTGTGCTGCGAGCGCACGTACAGCAAGCGGCAGTCGCTGTACGAGCACTGTCTGGTGCACGAGAATCCCGACTGCTTCCGGTGCGACGTGTGCGGCAAGAGTTACTCCAGCAGCCGGAGCCTGCAAAACCACAAGTGGCGCATACACACGCCCGCGGCCGAGCGCCCGTTTCGCTGCGACGTCTGCGGCGAAACGTTCGTGAAGGATTACCTGCTCAAGCAGCATCTCGTGCATCATTTGGCGAAGCACAAAAAGCTAAACCACTGCGACGTGTGCGAGCGTTCGTTCACGACCGCGACGGTGCTCAAGTGCCACCAGCAGACGTACCATGGCGGCGGCTTCGCCCTGATCTGTGATATCTGCGCGAAGGGTTTCAACAGCCGGGCGCTGTTCGAAAACCATCGCCTGACGCACTCGGTGGAAGGCAAGTCGCAGCTGAAGCATCAGTGCGAACAGTGCAAGAAATGGttgcgcaacaaaaaatcctacCAGCAGCATCGCATACGCTGCCACACGAACGACGGTCCGGTGACGTGCAAGTTCTGCGGCAAGGAGTCGGTGAACGCGAGCGCCCTCAAGTCGCACGTGCATCTGCATCACGCGGCCCGGCCCGAATACCCCTGCACGCTGTGCGACAAACGGTTCAAGACGGCACTGCGGCTGCGGGAGCACGAGGCGACGCACACGGGCACGGCCCTGTACCGGTGTCCCTGGTGTCCGCGCACGTTCGCCTGCGGCTCGAACATGTACAAGCACAAAAAGGCGGGCCACCCGCTCGAGTGGGCTGCCTCGGTGAAGCAACGGTTCGGCGAGCGATGA
- Protein Sequence
- MDTGRVEPEPVSCDQCLLCQLNSTDRNLVTERLDTGQGTVADVICKHFWLSATTCTGRYICTTCWDVTYSFHKFYLEVERLHSAAVKQEPPAAPTQPKQQSDTTKADQLVWLNEGSTLITNVNEVFVKESLPESDDEPAEADEESDEDANIPLATLKQAAKPSATKPLVPLQQDGDGTAGNAQFPGVGLSLCRISGSSLELLCHDCYRKSNNANSSERSKEGARFTFAALLKHYRQVHGKPGYAVCCNRKYTRRRSLKMHLQTHGRKLVYRCVPCGIKFRKQESLDEHNLLIHTSEEEKRYRCDKCDKAFATEHLLNSHGLWHENVARKNITCSVCNIFFTSQPSLKKHRALHHPSMESSDVSVPSTNGSTAEADDEKLVASQYRTRISATEIGEQEKLIKRHCLLHCSRCAFFGESFTQLKEHAAEAHGLRSCDVVCCERTYSKRQSLYEHCLVHENPDCFRCDVCGKSYSSSRSLQNHKWRIHTPAAERPFRCDVCGETFVKDYLLKQHLVHHLAKHKKLNHCDVCERSFTTATVLKCHQQTYHGGGFALICDICAKGFNSRALFENHRLTHSVEGKSQLKHQCEQCKKWLRNKKSYQQHRIRCHTNDGPVTCKFCGKESVNASALKSHVHLHHAARPEYPCTLCDKRFKTALRLREHEATHTGTALYRCPWCPRTFACGSNMYKHKKAGHPLEWAASVKQRFGER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00102635; iTF_00095919; iTF_00093747; iTF_00107256; iTF_00104669;
- 90% Identity
- iTF_00104669;
- 80% Identity
- -