Basic Information

Gene Symbol
CDC5L_1
Assembly
GCA_008817895.1
Location
VTWG01001124.1:24084-27477[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 3.9e-17 4.3e-14 52.1 1.8 2 46 9 54 8 54 0.97
2 3 4.4e-12 5e-09 35.9 0.1 1 45 60 103 60 104 0.93
3 3 0.00027 0.3 11.0 0.0 21 45 129 152 124 153 0.87

Sequence Information

Coding Sequence
ATGCCGCGTATTATGATCAAGGGTGGTGTTTGGCGGAACACCGAGGATGAAATCCTCAAAGCCGCCGTCATGAAGTATGGCAAAAACCAATGGTCCCGTATTGCGTCGCTGCTGCATCGCAAGTCGGCGAAACAGTGCAAGGCACGTTGGTACGAGTGGCTGGATCCTAGCATTAAGAAGACGGAATGGTCCCGCGAGGAGGACGAAAAACTGCTCCATCTGGCCAAGCTGATGCCGACACAGTGGCGCACTATTGCACCGATCATCGGTCGTACGGCTGCGCAATGTTTGGAGCGGTACGAATACCTACTGGATCAGGCGCAGCGCAAAGAGGAGGGCGAGGATGGGATGGATGATCCGCGCAAGCTGAAGCCGGGCGAGNCGACACAGTGGCGCACTATTGCACCGATCATCGGTCGTACGGCTGCGCAATGTTTGGAGCGGTACGAATACCTACTGGATCAGGCGCAGCGCAAAGAGGAGGGCGAGGATGGGATGGATGATCCGCGCAAGCTGAAGCCGGGCGAGATTGATCCAAATCCCGAGACGAAACCCGCTCGGCCGGATCCCAAAGACATGGACGAGGATGAGCTGGAGATGCTGTCGGAAGCACGCGCCCGTCTAGCCAACACGCAGGGCAAGAAGGCGAAGCGTAAGGCGCGCGAGAAGCAGCTGGAGGAAGCTCGCCGTCTTGCGGCACTGCAAAAACGGCGCGAGCTGCGCGCTGCCGGCATTGGGCTCGGCAACCGGAAGCGCAAACTGAAGGGCATCGATTACAACTCGGAGCTTGCGGCAGCAAACGCTCGACGGGGAGCTGNTCGGCCGGATCCCAAAGACATGGACGAGGATGAGCTGGAGATGCTGTCGGAAGCACGCGCCCGTCTAGCCAACACGCAGGGCAAGAAGGCGAAGCGTAAGGCGCGCGAGAAGCAGCTGGAGGAAGCTCGCCGTCTTGCGGCACTGCAAAAACGGCGCGAGCTGCGCGCTGCCGGCATTGGGCTCGGCAACCGGAAGCGCAAACTGAAGGGCATCGATTACAACTCGGAGGTACCGTTCGAAAAGACCCCCGCACCCGGGTTTTACGATACTACCGACGAGTTTGTGGTGCCGATAGCGGCCGACTTTTCCAGCTTGCGGCAGCAAACGCTCGACGGGGAGCTGCGCACCGAGAAGGAGGCGCGGGAGCGGAAGAAGGATAAGGAAAAGTTGAAGCAGAGAAAAGAGAACGATATTCCGACGGCGTTGCTGAAGAACCAGGAACCGGCCAAGAAGCGTTCGAAGCTGGTCCTTCCGGAGCCGCAAATTTCGGACCAAGAATTGCAGCAGGTCGTGAAGCTTGGCCGGGCCAGCGAGATTGCCAAGGAGGTCGCTTCGGAAAGTGGCGTCGAAACGACGGATGCGCTGCTGGCGGACTATAGCATCACACCACAGGTGGCTGCCACCCCCCGGACTCCCGCCCCGGTGACGGATCGAATTCTGCAGGAGGCTCAAAACATGATGGCACTCACACACGTGGAGACGCCTCTCAAGGGCGGGGTCAATACACCGCTCCACCAGTCAGATTTTACGGGCGTGTTGCCCCAAAGCCAGACAGTGGCCACTCCCAATACCGTGCTAGCGACTCCGTTCCGCTCCGTCCGCGGACCGGACGGAAGTGCTACGCCGGGAGGCTTTTTGACGCCGGCTTCCGGGGCGATGGTTCCCATCGGCTCAGGCACACAGCCCCACGCACCCGGGGCAACGCCAAATTTCCTGCGCGATAAGCTAAACATCAACACGGAGGACGGGATGAGTGTGGCTGAGACGCCGGCCGCTTATAAATCGTACCAGAAGCAGCTGAAATCGTCGCTCAAGGAGGGACTTGCTTCCCTTCCAGCGCCGAGAAACGATTACGAGATCGTGGTGCCCGATAACGAGACGGACGAAGCGGCCGACGACGGTTCGATGGATGTGGAGCAGATGGTGCCGGATCAGGCGGACGTGGACGAGAAGCGCAAGCGCAACAAGCTTGCCCAAGAGGCAAAGGAGCTTTCTATGCGCTCCCAGGTCATTCAGCGTGACTTGCCCCGCCCGCTGGAAATCAATACAACCGTGCTGCGCCCATCGAATGAAATGCACGGGCTAACCGATCTGCAGAAGGCGGAAGAGCTGGTTAAGCAGGAAATGGTGAAGATGCTCAACTACGACGCGTTGCGCAATCCGATCCAACAATCGCAACCCGCGTCAATGAAGCGCCCCATGCTGAGCCAATACCAGGCGTATCTGGAGCAGCATCCGTACGAAACGATCGACGAGGTGGAATTGGACGAGGCACGCAAAATGCTGGCCGCGGAAATGGGTGTCGTGAAGCACGGTATGGCCCACGGAGACTTGTCGCTGGAAAGCTACACCCAGGTGTGGCAGGAATGCCTCTCGCAGGTGCTGTATCTGCCCAGCCAAAATCGCTACACGCGTGCCAACTTAGCCAGCAAGAAGGACCGCATCGAATCGGCCGAGAAGCGGCTCGAAATCAACCGAAAGCACATGGCCAAGGAAGCGAAACGGTGCGGCAAGATAGAGAAGAAGCTGAAGATTCTCACCGCCGGGTATCAGGCACGGGCGCAAGCGTTGGTCAAACAGTTCCAGGACACGAACGAGCAGATCGAGCAAAACTCGCTGGCGCTGTCGACGTTCAAGTTTTTGGCGGCACAGGAAGATCTGGCCATACCGAAGCGTTTGGAGTCGCTAACGGAGGATGTGATGCGGCAGACGGAGCGCGAGAAAACTCTGCAAAACCGTTACGCACAGCTGACCGaggagctggaggagctgaACCATCTGCTGGAGGAGGCACGTGTTAATGGTGTGCAGGAGCATGAGGAGGGTGGTAAGGAGCGGGACCCGCTTGTAAACGGTCGGCTGGAGCATCGGGAGGTGGAGGAGAAAGAGGAACCGGTGGTAGATAATCCCTCAAACGGACCGGAGGACAGCAACGTGCAGGAGGAATCGTCCGATTCAAATGCAGCTGAAGATGAACCGCCAGAGAATGAAGGCGAAGGAAATCCTGAGGCGCAGGAACGGCAGAGCGAGAGCCCGGAGGAATCTGTCCCAGGGCAGGATAGTGGTGAAAGTGAGGAAAATACTTCCGAAGGTCAAGAGAatcaggagcagcagcaggatgaaCCGATGGAACaagacgacgaggaggaggatgctTCTAATGAATAA
Protein Sequence
MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEYLLDQAQRKEEGEDGMDDPRKLKPGEXTQWRTIAPIIGRTAAQCLERYEYLLDQAQRKEEGEDGMDDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIGLGNRKRKLKGIDYNSELAAANARRGAXRPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIGLGNRKRKLKGIDYNSEVPFEKTPAPGFYDTTDEFVVPIAADFSSLRQQTLDGELRTEKEARERKKDKEKLKQRKENDIPTALLKNQEPAKKRSKLVLPEPQISDQELQQVVKLGRASEIAKEVASESGVETTDALLADYSITPQVAATPRTPAPVTDRILQEAQNMMALTHVETPLKGGVNTPLHQSDFTGVLPQSQTVATPNTVLATPFRSVRGPDGSATPGGFLTPASGAMVPIGSGTQPHAPGATPNFLRDKLNINTEDGMSVAETPAAYKSYQKQLKSSLKEGLASLPAPRNDYEIVVPDNETDEAADDGSMDVEQMVPDQADVDEKRKRNKLAQEAKELSMRSQVIQRDLPRPLEINTTVLRPSNEMHGLTDLQKAEELVKQEMVKMLNYDALRNPIQQSQPASMKRPMLSQYQAYLEQHPYETIDEVELDEARKMLAAEMGVVKHGMAHGDLSLESYTQVWQECLSQVLYLPSQNRYTRANLASKKDRIESAEKRLEINRKHMAKEAKRCGKIEKKLKILTAGYQARAQALVKQFQDTNEQIEQNSLALSTFKFLAAQEDLAIPKRLESLTEDVMRQTEREKTLQNRYAQLTEELEELNHLLEEARVNGVQEHEEGGKERDPLVNGRLEHREVEEKEEPVVDNPSNGPEDSNVQEESSDSNAAEDEPPENEGEGNPEAQERQSESPEESVPGQDSGESEENTSEGQENQEQQQDEPMEQDDEEEDASNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
-
80% Identity
-