Afar012422.1
Basic Information
- Insect
- Anopheles farauti
- Gene Symbol
- -
- Assembly
- GCA_000473445.2
- Location
- KI915040.1:17785981-17788957[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.3 2.6e+02 2.0 2.3 1 14 50 63 50 66 0.82 2 13 0.00089 0.053 13.6 1.7 2 23 353 374 352 374 0.97 3 13 2.7e-06 0.00016 21.5 0.9 2 23 381 402 380 402 0.97 4 13 0.15 8.7 6.6 3.0 1 23 412 434 412 434 0.96 5 13 1.1 65 3.8 0.0 3 23 459 486 457 486 0.83 6 13 7.8 4.6e+02 1.2 1.1 2 20 493 511 492 514 0.64 7 13 4.4e-07 2.6e-05 24.0 2.5 1 23 552 575 552 575 0.96 8 13 0.029 1.7 8.8 3.8 3 23 582 602 580 602 0.94 9 13 2.4e-05 0.0014 18.5 1.5 1 22 607 628 607 629 0.91 10 13 0.0026 0.15 12.1 0.3 2 23 638 660 637 660 0.97 11 13 9.9e-05 0.0058 16.6 1.1 3 20 668 685 666 687 0.93 12 13 4e-05 0.0024 17.8 0.4 1 23 698 720 698 720 0.99 13 13 0.00043 0.025 14.6 2.6 1 23 726 749 726 749 0.98
Sequence Information
- Coding Sequence
- ATGGAGCAATCCATAACGTGCGTGCTTTGCCTGTCCGGCGAGGCGCAAAGTTTTCTGAAAGTGTACATTGACGAAAGCCAGGAGAGTGATATTGCGGCGACCATAACAAAACATCTCTGGGTAGGTGTGAAACCAACGGAAGATTCATACGTTTGTAACGGATGCTGGAAATGTTTGGATGATTTCCATCAATTCTACATCCGTCTGGAGAGTATACACTCCGAAGAGCAGGAGGAATCGCAAAGCAACCCGAAGGATATCAGGCAGTATCTTTTCGAGTTTCATCCCGTAGAGGATATAAAAATTGAACAGCTAGAGGGTGTAGAAGTGGAAGAAGCAGAGCAGGTGGAACAGGAATATGAAAAAGAAGTAGCAGATCATGGCGGTAAAGCGGACCGTTCCAGCGGTCGACCGAAAAGAGCAAGTGCAGTACAGGCAACCTACCGAAACGAAGAGTCGGACGCAGAATGGGAGAAGGATTATTTAGCCACAAACGACGACGACGAAGACATCGACGATGGAGATTACGATGAACAGGAAGAAACAAAGAATGCGCGGAACATAAAATTAGAGGATGACGATGATGAGGATGAGGTTATCAACTACGACAAACTAAACAGGGCGAAAGGCTTAGTGACGGCTGGATGTGAATCGAAACCTGTCGAAAATACGCAACCATCGAATGCCGACCCAGTGCCAGTGAAGCGAGGAAGAGGACGACCACCGAAGATAAAAACGGAAGGCACAATCAAACCGATCCCAGCCAAAAAACAAATTCCCGCACGGCGTGGTCGAAGGCGAAAGGTGTCCATCACCAGCAGTGAATCAGATTTGGACTTTGAATCCGATTTGGAAACGCTGGAGGACAAATATCGCAAGTACTCGAAGGGAGGGCAAACGAAAAAGTCACCCGGCACACGGGAAATGCGCGATAAGCGTATATTTTCTTACGTGAGCGAATTTATATGCTACCACTGTCCGGAAAAGATAACGTTCGAGCGGTTCCATCATGCGAATCAGCACTACAAGCAGGTCCACAACGAGCCCGCTTTTTTGCGGTGTCCCAAATGTTCCAAGAAGTGTTTCACCCCAGGTGGCTTCGTGAGCCATATGGAGACGCACGAGGACCCGGACAGGAATAAGTGCAAAATCTGCGGTAAGGTTACGGATCAGCAGATCACGCTGAAGAAACACATGCGAGCGCATCAGGAGAAGCTGGAGAAGGACTATCCATTCCCGTGCAGTCAATGTACTCGCCGTTTCGAGCACGAGGAAAAACGCGATAAGCACGAGCGCCTACACGGTCGGAAGGTGGTCATCAAGAAGGAGAAAGGCCGTGATCTGGAGTTGCTAGAGTTTTACAAACGCATCTATTGCGAGATATGCGAGGATAACAAACCGGAATCGACCTCTTTCGACAACTTCTGGGATCTGAAGGTGCACATGGGCAACGAACACAACAAAGCACCGTACCTAAAGTGTCCTATATGCTTCAAAAAGAACGTCTGTCGTCAACAGCTGATGGTGCACGTCGACGTGCACAATAATCCAGAAAATTACAGGTGTGAAGTCTGCAAAGAGATACATCAGAATCTTGAAAAACACATGATCAAGGCGCACACAGCGGACACGTCGCTACCGGACGAGAAAAACTACAGCTGTGAACATTGTGGCAAAATGTTCAAATATCAAACCAACTTGCGAAGTCACATAGATCGCGTCCACGGCGTAAAGGATGTGTGCTGTAACATCTGCAATAAATACTTCAACCATAAAGCTCTAAGTGCGCACAAACGTTCCGCGCACACAGACGAAATGTTCATGTGCGAACATTGTCCAAAAATGTTTAAAACACGCAGCGGTCTCGAATCGCACAAGGGCGACCACGACGAAACGCAGCGCAAATCCGTTAAGTGCAACCTGTGTGGGAAGGAGATGCGTCGCGGTGCCAGCATGGCAAAGCACATGAAAACAATCCACTCGCAGGAGGATCCGGTTAACTGCAATCTGTGCGGCAAGACGTTCCGCACATCGTTCCACATGTTGCGCCACCGTGCAAATACTTGTGCCGCCACCATCAACAGTCGACCATACAAATGTGAGGTGTGCGGCAAGGGCTTTGCCATGAAGCTGACAATGACCGAGCATATGACGACGCATACGCGAACCAGCCTCTATCAGTGCGCTTTTTGTTTCAAAACGTTCGGTTACATTTCAAATCTTTACAAGCACCGCAAGAAGGCTCATCCGCTCGAGTGGCAAGAGGTACAGGCGCGTCCCGAGCAGGGCATAGCTACCGTCATTGAAATTCGCAACTAA
- Protein Sequence
- MEQSITCVLCLSGEAQSFLKVYIDESQESDIAATITKHLWVGVKPTEDSYVCNGCWKCLDDFHQFYIRLESIHSEEQEESQSNPKDIRQYLFEFHPVEDIKIEQLEGVEVEEAEQVEQEYEKEVADHGGKADRSSGRPKRASAVQATYRNEESDAEWEKDYLATNDDDEDIDDGDYDEQEETKNARNIKLEDDDDEDEVINYDKLNRAKGLVTAGCESKPVENTQPSNADPVPVKRGRGRPPKIKTEGTIKPIPAKKQIPARRGRRRKVSITSSESDLDFESDLETLEDKYRKYSKGGQTKKSPGTREMRDKRIFSYVSEFICYHCPEKITFERFHHANQHYKQVHNEPAFLRCPKCSKKCFTPGGFVSHMETHEDPDRNKCKICGKVTDQQITLKKHMRAHQEKLEKDYPFPCSQCTRRFEHEEKRDKHERLHGRKVVIKKEKGRDLELLEFYKRIYCEICEDNKPESTSFDNFWDLKVHMGNEHNKAPYLKCPICFKKNVCRQQLMVHVDVHNNPENYRCEVCKEIHQNLEKHMIKAHTADTSLPDEKNYSCEHCGKMFKYQTNLRSHIDRVHGVKDVCCNICNKYFNHKALSAHKRSAHTDEMFMCEHCPKMFKTRSGLESHKGDHDETQRKSVKCNLCGKEMRRGASMAKHMKTIHSQEDPVNCNLCGKTFRTSFHMLRHRANTCAATINSRPYKCEVCGKGFAMKLTMTEHMTTHTRTSLYQCAFCFKTFGYISNLYKHRKKAHPLEWQEVQARPEQGIATVIEIRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00099199;
- 90% Identity
- iTF_00099199;
- 80% Identity
- -