Afar005406.1
Basic Information
- Insect
- Anopheles farauti
- Gene Symbol
- -
- Assembly
- GCA_000473445.2
- Location
- KI915041.1:11925484-11926455[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-14 2.6e-11 42.6 0.0 2 34 107 139 106 146 0.94
Sequence Information
- Coding Sequence
- ATGGTCAACAGCTACCAGTCGGCGAACCTTTCGACACCGACGTCCCCGCAGGCCGGTAGCGATCAAACGACGGGTCTCGTGTACAGCACCGGCACACCGAACCAATCGCCACTCGGTGCGGCCACGGCAGCCGGAACCGCGACGGCAACGAACGCGAGCGGGAATGGAAACGCGGCTGGAAACGGTGGGGGAGCAGCGGGAACCGGTGGGGCAGCGGCACCCGGTACCGGTACGGGCGGAACGCCGGGTACGGCGGGAGCGGCAGCCGGTGCCACCGGTCAGCCGGTCAAACGGAAACGCTCGGTCAATCCGCAGGGCGACGAAAACTTCCTGCGCGCCCTCGAAGCGGTCCGGTTCGGGGGGATCGGGTTCTGCAAGGCCGCCCGGCTGTACGGCGTGAACAATCGCACGCTGTGGCTGGACCTGCATCAGATGTCCCGCCAGCGGTACCCGGACGCGACGACCGTCAACATGAACACGGGGGCGGTCAATTTGCAGGGTCTAAACTTTAACTCCATGTAA
- Protein Sequence
- MVNSYQSANLSTPTSPQAGSDQTTGLVYSTGTPNQSPLGAATAAGTATATNASGNGNAAGNGGGAAGTGGAAAPGTGTGGTPGTAGAAAGATGQPVKRKRSVNPQGDENFLRALEAVRFGGIGFCKAARLYGVNNRTLWLDLHQMSRQRYPDATTVNMNTGAVNLQGLNFNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00104305; iTF_00104303; iTF_00095584;
- 90% Identity
- -
- 80% Identity
- -