Acul008865.1
Basic Information
- Insect
- Anopheles culicifacies
- Gene Symbol
- -
- Assembly
- GCA_000473375.1
- Location
- AXCM01002675:5125-13735[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.7 6.1e+03 -2.9 0.0 13 30 67 84 59 86 0.82 2 9 0.0016 5.6 6.9 0.2 23 47 107 131 101 137 0.84 3 9 0.0047 17 5.3 0.1 23 48 135 160 132 165 0.85 4 9 0.0029 10 6.0 0.1 23 52 163 192 159 194 0.86 5 9 0.012 44 4.0 0.0 23 49 191 217 188 222 0.85 6 9 0.36 1.3e+03 -0.7 0.0 23 48 219 244 215 250 0.82 7 9 0.71 2.5e+03 -1.6 0.0 23 43 247 267 228 273 0.83 8 9 0.015 53 3.7 0.0 21 45 273 296 266 302 0.88 9 9 0.00014 0.51 10.2 0.2 23 44 303 324 300 330 0.91
Sequence Information
- Coding Sequence
- ATGATGGCACCCGAAGAGTCGCAAACCCAATTCGAAGATGGTGTAATCGAACTAACACGTTCCGAAATGCTACAGCAGGATCAACTAGTAGACAATAAGCATTTTGTGGTATCGCTATCCCTGGGCAATACGATCATCAATCTCAACAAAATCAAGTGTCCACAATGCCGGAAGCGTTTCGATACGATGGAGGAAATGGAACAGCATCGGACCAAGCATTTGACGGAGAACAAGTTTAAATGCGAGATCTGTAGTAAAGAATTTCCCAGCCATAGTTCCATGTGGAAGCACACGAAGGCACATACCGGTGAACGACTCAAACCGTTCAAGTGTCCGATTTGTGAAAAGTGTTTCACCCAACAAGCCAACATGCTAAAACATCAGCTCCTTCATACCGGACTTAAACCTTACAAATGTCCCGTGTGCGAAAAAGCATTTTCGCAACATGCAAACATGGTCAAACATCAAATGCTTCATACAGGTCTTAAACCATACAAGTGTCCTGTATGCGAGAAAGCCTTCACACAACAGGCTAACATGGTGAAACATCAAATGTTACACACCGGTATTAAACCGTACAAGTGTCCCACCTGTGACAAAGCATTTGCCCAGCAAGCAAACATGATGAAACATCAAATGTTGCATACGGGACTAAAGCCGTACAAGTGTGGTACATGTGACAAAGCGTTTGCCCAGCAGGCCAATATGGTCAAACATCAGATGCTCCATACCGGTTTAAAACCGTACAAATGCAATACCTGTGGCAAGGCATTCGCACAGCAGGCCAACATGGTTAAACACGAGATGCTTCATACCGGGGAAAAACCATTCAAATGCAAAAGCTGTGATAAGGCTTTCTCACAAAATGCCAATCTGAAAAAGCACGAAATGGTACATCTCGGCATACGGCCACACACCTGCCCGCTGTGTCCGAAGTCCTATTCGCAGTATTCGAATTTGAAGAAACATTTGCTGAGCCATCAGAAGCAAGCGATCAAGCAGGAGCAACAAAACGGTCAAGTGATGGCCATACTGTACAGCTGTCAGACGTGCAAGATGCAGTTTGAGGATATCATCGAGTTCGAACGCCACACTAGACATTGTGGCATTAGCACCGTACAGCAGCACAGTGTGAAGCTGGAAAACATTAAGAGCGAAGTTGATATCGACGGTAGCTCTAATTCGGGCATGCAGCAACACATTTCCACTACGAATGGCGGTGCATCAAATGGGGGGAACGGAATCAGCGTCAGCCAATCGCAACCACCCACACCGATGCATATCCCGTCGGCCATCCTTACCTCAGTCATCTCGTCGTCGGTTGGTTCGAATGTGACCGCACACAACCTAGCACCCGCCGCCCACTCCCATCACGGGCATGTGACGGCAAATGGTGGAATTCTATCCGGCATCCCGACCGTCGTTACGCACGATGCGGTAACCGCTGCACCAGCGCTGGCCGGTCCTGGGTCCCTTCTGCCGAGCGCCTCCTCCTCGTCGATGATGCTACCGTTTGTAGTGAAGGCGGAGAAACCGGATGATGAAAACAATGGTGGCGTTGGTAGTGAGGCTAGTTTACGGTAA
- Protein Sequence
- MMAPEESQTQFEDGVIELTRSEMLQQDQLVDNKHFVVSLSLGNTIINLNKIKCPQCRKRFDTMEEMEQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCEKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQQANMVKHQMLHTGIKPYKCPTCDKAFAQQANMMKHQMLHTGLKPYKCGTCDKAFAQQANMVKHQMLHTGLKPYKCNTCGKAFAQQANMVKHEMLHTGEKPFKCKSCDKAFSQNANLKKHEMVHLGIRPHTCPLCPKSYSQYSNLKKHLLSHQKQAIKQEQQNGQVMAILYSCQTCKMQFEDIIEFERHTRHCGISTVQQHSVKLENIKSEVDIDGSSNSGMQQHISTTNGGASNGGNGISVSQSQPPTPMHIPSAILTSVISSSVGSNVTAHNLAPAAHSHHGHVTANGGILSGIPTVVTHDAVTAAPALAGPGSLLPSASSSSMMLPFVVKAEKPDDENNGGVGSEASLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00103817;
- 90% Identity
- iTF_00097915;
- 80% Identity
- iTF_00097915;