Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.65 1e+03 -0.5 1.4 17 40 20 40 12 43 0.68

2 7 0.00033 0.52 10.0 4.0 8 40 40 68 33 71 0.82

3 7 0.0097 15 5.3 0.2 18 34 77 90 69 96 0.74

4 7 0.0017 2.6 7.8 1.0 14 40 101 124 93 132 0.83

5 7 0.0067 11 5.9 1.3 17 40 136 156 121 159 0.80

6 7 0.0041 6.5 6.6 1.5 18 40 165 184 156 187 0.82

7 7 0.0015 2.3 8.0 0.4 17 40 192 212 184 215 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.65	1e+03	-0.5	1.4	17	40	20	40	12	43	0.68
2	7	0.00033	0.52	10.0	4.0	8	40	40	68	33	71	0.82
3	7	0.0097	15	5.3	0.2	18	34	77	90	69	96	0.74
4	7	0.0017	2.6	7.8	1.0	14	40	101	124	93	132	0.83
5	7	0.0067	11	5.9	1.3	17	40	136	156	121	159	0.80
6	7	0.0041	6.5	6.6	1.5	18	40	165	184	156	187	0.82
7	7	0.0015	2.3	8.0	0.4	17	40	192	212	184	215	0.83

Coding Sequence: ATGTCACAGCAGGCGCTGGAAAGTACGGGTGTGAAAATTTCCAACTGCTCGaaaccgttcgcctgcaccgaatgcaacaaattgtttcgccaactgagcacactgaccaaccacatgaaaatacacaccggcgaaaaaccgtacaagtgcacgatctgtgggaaggagtttcgccaaacaactacactatcgaaccatATGAAAATTCATACAGGGGAAAAGCCCTTTagttgtaacttttgtgacaaacagttccgccagctaagcaccctgtcaaaccacaagaaaattcacactggagaaaaaccgttcgaatgttcggtttgcggcaaacagttccgacagtccagcacgctcaacagtcacatccggattcattcggatgataaattttGCATAAAACCCTTCAAATGCAGCATCTGTCCGAAGGAGTTCCGCCAGACGACGACCCTAGCGAATCACATCAAAATTCACACTGgtgaaaagccgtacgcctgtacgtactgcagcaaaacgtttcgccagacgggaacgctttcgaaccatctgaagattcataccggggaaaaaccgttcgagtgttcggtttgcggtaaacagttccggcagtccagtaccttgaacagtcacattcgtatccatgcggACGACAAGTATTGCAAACCTTCACAGACGGAACAGCGGTCCATTGTGACGATAAACGGTGGGCTTAATTTAAAAGATGAGGACGTCAAACCGTTCTTTGCCATGATGTAA
Protein Sequence: MSQQALESTGVKISNCSKPFACTECNKLFRQLSTLTNHMKIHTGEKPYKCTICGKEFRQTTTLSNHMKIHTGEKPFSCNFCDKQFRQLSTLSNHKKIHTGEKPFECSVCGKQFRQSSTLNSHIRIHSDDKFCIKPFKCSICPKEFRQTTTLANHIKIHTGEKPYACTYCSKTFRQTGTLSNHLKIHTGEKPFECSVCGKQFRQSSTLNSHIRIHADDKYCKPSQTEQRSIVTINGGLNLKDEDVKPFFAMM

Sequence clustering based on sequence similarity using MMseqs2