Acou003284.1
Basic Information
- Insect
- Anopheles coustani
- Gene Symbol
- ham
- Assembly
- GCA_943734705.2
- Location
- OX030900.2:33158480-33160015[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.56 1.3e+03 -0.3 0.0 11 29 92 110 87 122 0.83 2 4 0.00026 0.61 10.3 0.0 9 45 287 323 281 327 0.93 3 4 0.0032 7.7 6.8 0.5 21 45 327 351 323 355 0.89 4 4 0.00096 2.3 8.5 0.3 20 45 355 380 351 387 0.88
Sequence Information
- Coding Sequence
- ATGCGAGAGAAGGATCACTCACCGCGCAAGATGCTGCCCAGTCCAAAGCAAGGCGCGGTCTACCCGCTGCTCGGTCTCGGATCCACCCTGCCCGCCCCGTTCGATCTCTCGCTCGTCAACCGGTCCTCGTCCTCCAACCTgctgcaccagcagcagcaacaccagcagagCCTCGCCGAGCAGCCGCTCGATCTGCGGGTCGAGCGCAAGAAGTCCTCCGGCGCGAGCGGCGGAGGCGGCggcacctccaccaccgcctcGTCCGACGACGAGGGCACCGATCCGCCGCGCGCCAGCTCCACCGACAGCAAGCCGAGCAGCAATGTGATATTCTTTAacgataacaacaacaactccaACAAtctgaacaacaacaataacaacaacaacaacaacaacaatagcaGTAGCAACCACACCAAGTCTACTTCCGATAGCAATAAGAGTCCGAGTCCCACGAATcatcacaacaacaacaacaacaacaacaacaacaacaacagctcgaagtacaccaacaacaaccacatcAACATCAAGGATGAGTTCCGAATATCGACCCTAGCGAACCACAGCCCATCGGCGCTCTTCCCGCCGCCCGGTCTCAACCCGCTCATGCTAGAGGCGATCGCGAAGGCGGGACTGCCGCTTCCGTACCGTGGTTCCTTCCTGCCACCCCGGTCGCCTGTGTCCTACGATCTGCAGCGGCTAAAGGAACGGGAAGCCCTGGCCGCCAGCCTGTCCCAGCTTCGCCAGAGTGCGACGAACGGCTCcggaggtggaggtggtggtgggggaggAGGTGGTGGCAACAACGtgctgaacaacaacaacgcgaACATCATCAACCACAATCTACCACCAGGTGCCGGTGGTCCGGGAGTTCACGGCAAAAACAAGGACCGGTATGCGTGTAAATTCTGCGGGAAGGTGTTCCCCCGGTCGGCGAACCTAACGCGCCACCTGCGGACGCACACCGGCGAGCAGCCGTACAAGTGTAAGTACTGCGAGCGGTCCTTCAGCATCTCGAGCAACCTGCAGCGTCACGTGCGCAACATCCACAACAAGGAGCGCCCGTTCAAGTGTGCCCTCTGCGAGCGATGCTTCGGGCAGCAGACGAACCTCGACCGGCACCTGAAGAAGCACGAGGCGGACGCGGCCGGCCTCGGACTCGGCCTGGACGAGCGGCTACGGGCGGCGCGGCGGAACTCACGCGGCATCCCGGAGGACTCGTACTTCGAGGAGATCCGCTCGTTCATGGGCAAGGTGACGCAGCTACCGATTCCGCTTCgattgcagcaacagcagcagcaaccttCGTCCCAGACGCACCAGTCCAACTCCGGAACGGACAGTCCGTTCGGCCGACGTCATCAGGACCTGCAGAACGACACCCACTCGTCCCGCAGCTCGACACCGTCGGACGACGAACCGGTGTCGCCGGCGGCCAGCATCGGCAGCCACCCGGGCGAGGAGGACATCAAGATGGAGACCAACAACAACGAGGACGGCGATGAACCGTTACAGGTCACCTGA
- Protein Sequence
- MREKDHSPRKMLPSPKQGAVYPLLGLGSTLPAPFDLSLVNRSSSSNLLHQQQQHQQSLAEQPLDLRVERKKSSGASGGGGGTSTTASSDDEGTDPPRASSTDSKPSSNVIFFNDNNNNSNNLNNNNNNNNNNNNSSSNHTKSTSDSNKSPSPTNHHNNNNNNNNNNNSSKYTNNNHINIKDEFRISTLANHSPSALFPPPGLNPLMLEAIAKAGLPLPYRGSFLPPRSPVSYDLQRLKEREALAASLSQLRQSATNGSGGGGGGGGGGGGNNVLNNNNANIINHNLPPGAGGPGVHGKNKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFKCALCERCFGQQTNLDRHLKKHEADAAGLGLGLDERLRAARRNSRGIPEDSYFEEIRSFMGKVTQLPIPLRLQQQQQQPSSQTHQSNSGTDSPFGRRHQDLQNDTHSSRSSTPSDDEPVSPAASIGSHPGEEDIKMETNNNEDGDEPLQVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00108529;
- 90% Identity
- iTF_00094077;
- 80% Identity
- iTF_00096515;