Acou005096.1
Basic Information
- Insect
- Anopheles coustani
- Gene Symbol
- -
- Assembly
- GCA_943734705.2
- Location
- OX030900.2:57990507-57998640[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0019 4.6 7.5 0.1 21 43 82 104 75 113 0.86 2 8 0.0036 8.6 6.7 0.1 23 47 112 136 109 143 0.83 3 8 0.0077 19 5.6 0.1 23 47 140 164 136 169 0.85 4 8 0.0076 18 5.6 0.1 23 51 168 196 164 197 0.85 5 8 0.039 93 3.4 0.0 23 48 196 221 193 225 0.84 6 8 0.061 1.5e+02 2.7 0.0 21 45 222 245 220 250 0.87 7 8 0.00014 0.33 11.2 0.1 23 45 252 274 250 279 0.91 8 8 2.8 6.6e+03 -2.6 0.2 33 45 501 513 485 519 0.85
Sequence Information
- Coding Sequence
- ATGCTCAACCACGATCAATTGACTGACAATAAGCACTCGTTGGCCTTGTCCCTCTCCCTGGGCAATACGCTCATCAATCTCAACAAAATCAAGTGTCCACAATGTCGGAAGCGTTTTGATACGATGGAGGAAATGCAGCAACATCGGACGAAGCATCTGACGGAGAACAAATTCAAGTGTGAAATTTGTAGCAAAGAATTTCCCAGCCATAGTTCCATGTGGAAGCATACCAAGGCGCACACTGGCGAAAGACCTTTCGTGTGCCAGATATGCAACAAGGGCTTTACTCAGCTAGCCAACCTCCAACGACATGATCTCGTTCACAATGGACTGAAACCCTTCAAGTGTCCGATTTGCGAAAAATGTTTTACCCAGCAGGCAAACATGCTCAAACATCAACTACTTCATACTGGACTTAAACCATACAAATGTCCCGTGTGCCAGAAGGCATTTTCGCAACACGCAAACATGGTCAAACATCAAATGCTTCATACAGGCCTCAAACCATACAAATGTCCGGTCTGCGAAAAAGCCTTCACTCAGCAGGCAAATATGGTGAAACATCAAATGTTGCATACTGGAATCAAACCATACAAATGTCCAACCTGTGACAAAGCATTTGCCCAGCAGGCCAATATGGTGAAGCATCAGATGCTCCATACCGGAgaaaaaccattcaaatgCAAAAGCTGTGATAAGGCTTTCTCGCAACGTGCCAATTTGAAGAAACACGAAATGGTACATCTCGGCATCCGGCCACATACCTGCCCCCTGTGCACGAAGTCCTACTCGCAGTATTCGAACCTGAAAAAGCATTTGCTCGTCCATCAGAAGCAGGCGTtgaagcagcagcatcaaaaCGGGCAAGTGATGGTCATACTCTACAACTGCCAAACGTGCAAGATGCAGTTCGAAGATATTATCGAATTCGAGCGGCACACAAAGCAATGTGATATCAACaacggccagcagcagcatagcGTGAAGCTGGAGACGATCAAGAGCGAAGTTGACATCGATGGCAGCTCGAGCTCTGGGATGCAGCAGCACCTGGCGACGTCCAGCAACGGTAGCAATGGCAGCGCGATCAACGTTAGCCAACCGCAGCAGCCGCCCCCAACGCCGATGCACATTCCATCGGCCATCCTTACCTCAGTCATTTCGTCGTCGATCGGTGCAAACGTGACTGCACATAACCTTCCACCGACGGCTCACTCCTCCCACGTGTCTCACGTGACCTCTAATGGGGGCATTCTGGGCGGTATACCGCCAGGGCATCCTCacgctcagcagcagcacacgcCGCCAGGTGTGTCACTTTCGCAGCACATTTCTGCTCACgtccaacagcaacagcagcagcaacaacagcaacagcaacaacaggcccatcagcaacagcagcaacaagcagctcatcagcagcagcagcagcaacagcagcaacaacagcagcaacaacagctctCACCGGTCGGTAGTAGCCACCAGCAGCATTTGGtgctgcaacagcagcacaacCTGCCGATCCATCTGCAGCAGCAACTGTCGCATCATCTGATCGCGTCACACCTGCCACACCATCAGGACCATGCGGCGGCCGCCAGCGATCTGCATCATCAGGTGAATTTCCATCACCCGCACATCTCGCACCTGCCGAACATATCGCACAAGATCCTGTCGCCGCTGTTCCACATTCCGCCGTTCAACAATAACCACAGCACATAA
- Protein Sequence
- MLNHDQLTDNKHSLALSLSLGNTLINLNKIKCPQCRKRFDTMEEMQQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCQKAFSQHANMVKHQMLHTGLKPYKCPVCEKAFTQQANMVKHQMLHTGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKSCDKAFSQRANLKKHEMVHLGIRPHTCPLCTKSYSQYSNLKKHLLVHQKQALKQQHQNGQVMVILYNCQTCKMQFEDIIEFERHTKQCDINNGQQQHSVKLETIKSEVDIDGSSSSGMQQHLATSSNGSNGSAINVSQPQQPPPTPMHIPSAILTSVISSSIGANVTAHNLPPTAHSSHVSHVTSNGGILGGIPPGHPHAQQQHTPPGVSLSQHISAHVQQQQQQQQQQQQQQAHQQQQQQAAHQQQQQQQQQQQQQQQLSPVGSSHQQHLVLQQQHNLPIHLQQQLSHHLIASHLPHHQDHAAAASDLHHQVNFHHPHISHLPNISHKILSPLFHIPPFNNNHST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00103817;
- 90% Identity
- iTF_00109292;
- 80% Identity
- iTF_00109292;