Acou011724.1
Basic Information
- Insect
- Anopheles coustani
- Gene Symbol
- -
- Assembly
- GCA_943734705.2
- Location
- OX030901.1:47140403-47143191[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.2 4.1e+02 1.9 0.4 1 10 50 59 50 66 0.82 2 13 9.1e-05 0.0072 16.8 1.1 2 23 362 383 361 383 0.97 3 13 3.3e-06 0.00026 21.4 1.1 2 23 390 411 389 411 0.97 4 13 0.031 2.4 8.9 1.2 1 23 421 443 421 443 0.96 5 13 1.9 1.5e+02 3.3 0.0 3 23 468 495 466 495 0.78 6 13 8.2 6.5e+02 1.2 1.0 2 20 502 520 501 523 0.64 7 13 1.2e-06 9.4e-05 22.8 3.1 1 23 561 584 561 584 0.96 8 13 0.032 2.6 8.8 3.8 3 23 591 611 589 611 0.94 9 13 2.7e-05 0.0021 18.5 1.5 1 22 616 637 616 638 0.91 10 13 0.0037 0.29 11.8 0.3 2 23 647 669 646 669 0.97 11 13 7e-05 0.0055 17.2 0.7 3 20 677 694 675 696 0.93 12 13 4.6e-05 0.0036 17.8 0.4 1 23 707 729 707 729 0.99 13 13 0.00048 0.038 14.5 2.6 1 23 735 758 735 758 0.98
Sequence Information
- Coding Sequence
- ATGGTGGAATCCGAAAGTTGTGCACTCTGCCTGACCACGCAATCGAAATGGTTTCTCGAGGTGTTCTGTGAAGATAGTCAATCGAAGGATATAGCGGTGATAATatcgaaacacctttggttCGATTTAAAACCGACTAAGCAAACGTACGTTTGTGCGGATTGTTGGAAAAGTGTGCACgattttcatcttttctaCACCAAGCTTGAACGAATACACCATCTGGAAGAAGAAATCACAGAGCCTCCTACGAATAATGCTAAAACCAACTCCGAGCCTCATGAAGACTTCGAGTTTCATCCCGTGGAAACGATTAAGCTGGAACCGCTTGAGCACGACTATGGGGACGAAACGGCGCAACCTAAGCAGGAAGAACACACAAATGAAACAGTTcaaaatgaaagtgaaacagaTCGCAAGAAAGAGCGCCCCAGAAGATCTAATGTTGCCACGGTGAAGTACAAATCGGAGTCCTCCGATAACGAGTGGGACGTTGGGGGTAAAGATTTGCTCTCGCTGGATCTCGAGGATGACGATGTGGACGATGACGATTTTATGGATGATGAAGACGATGAGGATGACGACGATTTCATCAACTACGATGCGATAAACGATAATAAGGAACAGGTCGTTGTGAAGGAGGAGCAAAAAACTAACGATGACACGAAGGTACCACACGCGGCTGGTGACACGGGAACGccggatgttccggtaaaaCGTGGTAGAGGACGGCCACCTAAACGAAAGCTTGATGAACATGGGGCTCGCCAGCCTAGTGCGTCTTATGGGGCCTCGCTAAAGGTTCGCAAGCGGCGGGCTCGGAAAAGAATGGATTCGATCTCCTCCAGCGACTCGGAGTTGGACGATGGGTCGGACTTTGAACgtaaagaatggaaaaaattGCGCGCAAAGTCGAAGAAGGACAGGGGCAAGCCGCTCGGCAGTCGGCAGATGCGGGATAAGCGAATATTTTCCTACGTCGATGAATTCTTCTGCTACTACTGCCCGGAAAAGGTTCTTTTTGAACGGTTCCACCATGCGAACCAACACTACAAGCGGGTGCATGATGAGCCGGCCTTTCTGCGGTGTCCCAAGTGTGGCAAGAAGTGTTTCACCCCCGGTGGCTTTGTGAGCCACATGGAGACACACGATGATCCGGAGAAAAATAAGTGTAAAATTTGCGGAAAAGTAACCGACCAGAAGATTACCCTAAAAAAGCACATGCGTGCGCACCAGGTGAAACTGGAAGAGAATCTCCCATACGCCTGCAGTCAGTGTCCGCGACGGTTCGAGCAGGAAAAGAAACGGGACAAACACGAGCGTCTGCACGGGCGTAAGATAGTgatcaaaaaggaaaaaggacgcGACCTGGAGCTGCTCGCGTTTTACAAGCGCATCTACTGTGAGGTGTGCGAGGAAGCCAAACCGGAGTCAACCTCTTTCGACAATTTTTGGGATCTGAAGGTGCACATGGGCAACGAGCATAACAAAACGCCGTACCTAAAGTGTCCGATATGCTTCAAGAAGAATGCCTGCCGCCAGCAGCTGATGGTGCATGTGGATGTGCACAATAATCCGGAGCACTATCGATGCGAAGTTTGCAAGGAGATACATCAGAATCTTGAAAAACACATGATTAAGGCTCACTCACCGGAAACGACAATACCGGATGAAAAGAACTATAGCTGTGAGCACtgtggaaaaatgtttaaattcaaaacaaatcttcGGAGCCATATCGATCGAGTGCACGGAGTTAAGGATGTTTGCTGTAATATCTGCAATAAATACTTCAACCACAAGGCACTCAGTGCACACAAGCGATCGGCGCACACCGATGAGATGTTCATGTGCGAGCACTGcccgaaaatgttcaaaacacGCAGCGGACTCGAATCGCACAAAGGGGACCACGACGAGAATCAGCGCAAGTCAGTCAAGTGCACTCTGTGTGGCAAAGAAATGCGGCGCGGTGCCAGTATGGCGAAGCACATGAAAACCATCCACTCGCAGGAAGATCCGGTCAACTGCAACCTATGCGGTAAGGTGTTCCGTACGTCATTCCACATGATGCGCCACCGGGCGAACACGTGTGCGGCTACGATCAGCTCGCGGCCGTACAAGTGCGAAGTGTGCGGGAAGGGTTTTGCCATGAAGCTAACAATGACCGAGCACATGACGACGCACACGCGCACCAGTCTGTACCAGTGTGCGTTTTGCTTCAAAACGTTCGGCTACATTTCTAATCTTTATAAGCACCGCAAGAAGGCGCATCCGCTTGAGTGGCAGGAAGTGCAGGCACGACCAGACCAAGGTATCGCCACGGTGATCGAGATGCGCAACTAG
- Protein Sequence
- MVESESCALCLTTQSKWFLEVFCEDSQSKDIAVIISKHLWFDLKPTKQTYVCADCWKSVHDFHLFYTKLERIHHLEEEITEPPTNNAKTNSEPHEDFEFHPVETIKLEPLEHDYGDETAQPKQEEHTNETVQNESETDRKKERPRRSNVATVKYKSESSDNEWDVGGKDLLSLDLEDDDVDDDDFMDDEDDEDDDDFINYDAINDNKEQVVVKEEQKTNDDTKVPHAAGDTGTPDVPVKRGRGRPPKRKLDEHGARQPSASYGASLKVRKRRARKRMDSISSSDSELDDGSDFERKEWKKLRAKSKKDRGKPLGSRQMRDKRIFSYVDEFFCYYCPEKVLFERFHHANQHYKRVHDEPAFLRCPKCGKKCFTPGGFVSHMETHDDPEKNKCKICGKVTDQKITLKKHMRAHQVKLEENLPYACSQCPRRFEQEKKRDKHERLHGRKIVIKKEKGRDLELLAFYKRIYCEVCEEAKPESTSFDNFWDLKVHMGNEHNKTPYLKCPICFKKNACRQQLMVHVDVHNNPEHYRCEVCKEIHQNLEKHMIKAHSPETTIPDEKNYSCEHCGKMFKFKTNLRSHIDRVHGVKDVCCNICNKYFNHKALSAHKRSAHTDEMFMCEHCPKMFKTRSGLESHKGDHDENQRKSVKCTLCGKEMRRGASMAKHMKTIHSQEDPVNCNLCGKVFRTSFHMMRHRANTCAATISSRPYKCEVCGKGFAMKLTMTEHMTTHTRTSLYQCAFCFKTFGYISNLYKHRKKAHPLEWQEVQARPDQGIATVIEMRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00109351; iTF_00094094;
- 90% Identity
- iTF_00109351;
- 80% Identity
- iTF_00109351;