Aatr004007.1
Basic Information
- Insect
- Anopheles atroparvus
- Gene Symbol
- -
- Assembly
- GCA_015501955.1
- Location
- CALTRM010000062.1:118489-121319[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7 1.4e+02 1.9 0.5 1 12 50 61 50 66 0.80 2 13 3.3e-05 0.0026 16.8 1.1 2 23 369 390 368 390 0.97 3 13 1.2e-06 9.2e-05 21.4 1.1 2 23 397 418 396 418 0.97 4 13 0.011 0.88 8.8 1.2 1 23 428 450 428 450 0.96 5 13 0.67 52 3.3 0.0 3 23 475 502 473 502 0.78 6 13 3 2.3e+02 1.2 1.0 2 20 509 527 508 530 0.64 7 13 4.3e-07 3.4e-05 22.7 3.1 1 23 568 591 568 591 0.96 8 13 0.012 0.92 8.8 3.8 3 23 598 618 596 618 0.94 9 13 9.7e-06 0.00076 18.5 1.5 1 22 623 644 623 645 0.91 10 13 0.0013 0.11 11.7 0.3 2 23 654 676 653 676 0.97 11 13 4.3e-05 0.0034 16.5 0.7 3 20 684 701 682 703 0.93 12 13 1.6e-05 0.0013 17.8 0.4 1 23 714 736 714 736 0.99 13 13 0.00017 0.014 14.5 2.6 1 23 742 765 742 765 0.98
Sequence Information
- Coding Sequence
- ATGGTGGAATCCGAAAGCTGTGTACTTTGTCTCACGTCTGAGTCGAAATGGTTCTTGGAGGTATTCTGTGACGATAGCCAATCGAAGGATATCGCCGTGATCATAGCGAAACACCTTTGGTTCGATTTAAAACCGGCCCAGCAGACGTACGTTTGTGCCGATTGCTGGAAAAGTGTGCACGATTTTCATCAGTTTTACTGCAAGCTAGCACGGATACACCAGCGGGAAGTGGGTGACGCTGTACCTTGCTCGAGTAACGCCAAGAGCAACGGCGAACCTCAAGAAGACTTTGAGTTTCATCCGGTCGAAACGATTAAGGTAGAACCGCTTGATACGGGGTACGGAGATGAAGAGCATTTCAAGCTGGAAGGAAACGCCGACGATGGCCCGGGTAACGAGAGTGACAAGGAACGCACGAAAGAACGTCCCCGAAGAGCCAGTGCTGCCCCGGTTAAATACAAATCGGAATCGTCcgacaacgagtgggaaggtaggggcaaagatttgctggcggtggacctcgaggacgacgacgaggacgatgaagactacatggacgacgacgatgacgacgaggaggaggatgataatgaggaggaggtcatcaactacgatgcgatacacgttaaaaaggatgccgatgcaccggttgccgtgaaggaggagcgaaacgacgatgctaagccgatACCGTCCACCGAAGCTGAAACGGGCACGCCGGTCGTGCCAGTGAAGCGCGGAAGAGGACGCCCGCCCAAGCAAAGGCTCAACGAAGGGCCACGCGTGGCCAGTCTGTCCGTACCGAAGCGAGGACGCCGGCGGCGGACAAGGAAAAGTATTAACGCCATCAGCTCCAGCGATTCCGAGCTGGACGATGCATCGGACTCTGGGGACGCGGTCGAGGGCAGGGAGTGGAAGAAGCTGGGCGCAAAGTCTAGAAAGGGTAAGAAAAAACCGCTCGGCAGTCGACAGCTGCGGGACAAGCGAATATTTTCGTATGTGGACGAGTTCTTCTGCTACTACTGCCCGGAGAAGATCCTGTTCGAACGGTTCCACCATGCGAACCAACACTACAAGCAGGTGCACGACGAGCCGGCCTTTTTGCGGTGCCCCAAGTGTGGCAAGAAGTGCTTCACCCCCGGTGGGTTTGTGAGCCACATGGAGACGCACGATGATCCGGAGAAGAACAAGTGTAAAATCTGCGGCAAGGTAACGGACCAGAAGATTACGCTCAAGAAGCACATGCGTGCGCACCAGGTGAAGCTGGAGGAGAATCTCCCGTACGCCTGCAGCCAGTGCCCGCGGCGGTTTGAGCAGGAGAAGAAACGGGACAAGCACGAGCGACTGCACGGGCGCAAGATTGTGATCAAGAAGGAAAAGGGGCGCGATCTGGAGCTGCTCGCGTTCTACAAGCGCATCTACTGCGAGGTGTGCGAGGAGGCCAAACCGGACTCGACCTCGTTCGACAACTTCTGGGATCTGAAGGTGCACATGGGCAACGAGCACAGCAAAACGCCGTACCTCAAGTGTCCGATATGCTTCAAGAAGAATGCCTGCCGCCAGCAGCTGATGGTGCACGTGGACGTGCACAACAATCCGGAGCACTATCGTTGTGAGGTGTGTAAGGAGATACACCAGAACCTTGATAAGCACATGATCAAAGCGCACACGCCGGAAACGACGCTACCGGACGAAAAGAACTACAGCTGTGAGCATTGCGGGAAGATGTTCAAATTCAAAACCAACCTTCGGAGCCATATCGATCGAGTGCACGGGGTGAAGGATGTTTGTTGTAACATTTGCAACAAATACTTCAATCACAAGGCCctgagtgcccacaagcgatccgcgcacaccgacgagatgttcatgtgcgagcactgcccgaagatgttcaaaacgcgcagcgggctcgaatcgcacaagggcgaccacgacgagaaccagcgcaaatcggtcaagtgcacgctgtgcggcaaggagatgcgccgcggtgccagcatggcgaagcacatgaaaacgatccactcgcaggaggacccggtcaactgcaacctgtgcggaaaggtgttccgcacctcgttccacatgctgcgccatcgggcgaacacgtgcgccgccacgatcagctcgcgcccgtacaagtgcgaggtgtgcggcaagggcttcgccatgaagctgacgatgaccgagcacatgacgacgcacacgcgcaccagcctctaccagtgtgcgttctgcttcaagacgttcggctacatttcgaatctctacaagcaccgcaagaaggcccatccgctcgagtggcaggaggtgcaggcacggcccgagcaaggCATCGCCACGGTGATCGAGATGAGAAACTAG
- Protein Sequence
- MVESESCVLCLTSESKWFLEVFCDDSQSKDIAVIIAKHLWFDLKPAQQTYVCADCWKSVHDFHQFYCKLARIHQREVGDAVPCSSNAKSNGEPQEDFEFHPVETIKVEPLDTGYGDEEHFKLEGNADDGPGNESDKERTKERPRRASAAPVKYKSESSDNEWEGRGKDLLAVDLEDDDEDDEDYMDDDDDDEEEDDNEEEVINYDAIHVKKDADAPVAVKEERNDDAKPIPSTEAETGTPVVPVKRGRGRPPKQRLNEGPRVASLSVPKRGRRRRTRKSINAISSSDSELDDASDSGDAVEGREWKKLGAKSRKGKKKPLGSRQLRDKRIFSYVDEFFCYYCPEKILFERFHHANQHYKQVHDEPAFLRCPKCGKKCFTPGGFVSHMETHDDPEKNKCKICGKVTDQKITLKKHMRAHQVKLEENLPYACSQCPRRFEQEKKRDKHERLHGRKIVIKKEKGRDLELLAFYKRIYCEVCEEAKPDSTSFDNFWDLKVHMGNEHSKTPYLKCPICFKKNACRQQLMVHVDVHNNPEHYRCEVCKEIHQNLDKHMIKAHTPETTLPDEKNYSCEHCGKMFKFKTNLRSHIDRVHGVKDVCCNICNKYFNHKALSAHKRSAHTDEMFMCEHCPKMFKTRSGLESHKGDHDENQRKSVKCTLCGKEMRRGASMAKHMKTIHSQEDPVNCNLCGKVFRTSFHMLRHRANTCAATISSRPYKCEVCGKGFAMKLTMTEHMTTHTRTSLYQCAFCFKTFGYISNLYKHRKKAHPLEWQEVQARPEQGIATVIEMRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00096586;
- 90% Identity
- -
- 80% Identity
- -