Acou006239.1
Basic Information
- Insect
- Anopheles coustani
- Gene Symbol
- -
- Assembly
- GCA_943734705.2
- Location
- OX030900.2:73927171-73936530[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-11 4.1e-08 32.9 0.0 2 39 594 632 593 636 0.90 2 4 3.4e-12 6.4e-09 35.5 0.1 2 39 648 685 647 688 0.94 3 4 5.1e-18 9.8e-15 54.1 0.0 3 45 704 747 702 747 0.97 4 4 3.5e-17 6.7e-14 51.4 0.0 1 43 754 797 754 798 0.96
Sequence Information
- Coding Sequence
- ATGCGAATGGCAAGTAGTTGTTCGAAGGAAGAGTGTATTAGGAGTTTACTACGGACGGCGGAGCAGCTGAAAATCAAAGGCCTTTGCGAGGTGGGCGAACCGCAGTACGAGCAGGACTACTCACCCGCGGTCAAGCGCTACAAGCCGtaccgatcgcgatcgccCCCGGACAACCGGcatcagcaccaccaccaccagcagccaccgccaccgcccccACCCTCGTCCGGTTCGGCGGGATCGGCGTCTACCGGCGGCGGGGGTCGTACCGGCTCGGGAGGTGCAGGCCCACACggcaacaacaccaacaccagcggCTCGTCTTCTTCCTCCCAGTCGACGGGCTACAGTGAAAACGGCAAGGGCGCCAAAGAACGATCGTCGGCCGGAGGAACAGTAGTCGGAGgcggcggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggcggcggtGGCCGTAGCCATTACCACCcttcccagcagcagcaccacagcCTGCACCATCACCACCCGCACCTGCACCATCCGCATCATCCGCACCACCATCTGCATCATCTTGCCGGAGACGAGGACGATGGATCGCCGTCCTCGGTCGTAGTGGTAGAAACGCACGATTTGACCACGACCGGGCCGTCGGCCAGCTCCGCGACAAAGGATAAGCTTTACCACctacagcagcaacagcaccaccaccaccaaacgcATCcgcagcaccatcatcatcatcacccacCGTCATCTCAGCAAATTGGAGGCAAAATGGCCAGCCTAGGAATGGGCGTTGGAATAAATGGCTCCGTGATGGGTGTAGTACCGATGGGCTATTTGGATTTTGCACCCGAGCCGCCCGCCCCGACCGCGACCCCGGTGACGGAGCATGTGGACATCAACTGTGCGCCAAGCAGTCACGATACGCGTGATCTGTCCAATTCTGTGCCAAACGATGGTGACTTACGAGTGAAATTCGAAACGTTACGTTCGCTAGATCCTCCCAATTCGGTGCAACTGGACAATCAGGCCGTGgcccatcagcagcagcaccagcagcaattgcatcaccagcagcagcaggcgcaGCAGCAACTGctacaccagcagcagcaacagcatttactccagcagcagcagcagcagcaacagcagcagcaacagcaccggCAAACTCCGCAGCCAGCAGGGGCGTCGGTGCCACCAAATGATCACCAGCGAAACTCGCCACCCCacattcagcagcagcagtcggcccaacagcagcaacacatCATGATGGTTgatccgcagcagcagcagcaacaccacccGACAACGCACAGCCCGGCCTCGAGCGTGTCGTCGTCCTCTTCCAGCCAACATCCGGAGAATCTGGTTACCGGTAGCGGTggcgccggtggtggtggtggtggcggtggatcAGTTACGCCCGGTCCTACCCCAAACAATGGCAACAGCAACGGTGGTGGCCCGAATGGGACCGGCGGTGGTGACGAGATGAAATCGAGACTGAACCTGAAACAGGAAATCATTACCGACGCCGCCGACCAGCAGCAGACGATGGAGGTCGAGCAGGATCAATCGTCGATGCATGGCATGGTCGTGACGCCGGAAATATCTGGCATTATGAACCAGAGCCAAATGAGCGATATGTATCAATCAGATGCCAGCGAAGACTCGAAGGCGGGTATTTTGGATGGGTCGTCTATGCAGTACACCAATCTGACCAGCCCGAACGAAGCGAAAACCCCAACGGGGCCTAAGACGTGGACCGCCGAGGATATGGAATCGGCACTAGAGGCCCTGCGTACACATAACATGAGTCTGACGAAGGCATCGGCAACTTACGGTATTCCATCGACGACCCTGTGGCAGCGAGCCCACCGGCTCGGCATCGACACACCGAAGAAGGAGGGACCGTCGAAAACGTGGAACGAAGATTCACTCAACAGTGCGCTGGAGGCGCTGCGCACCGGTACGATCTCCGCCAACAAGGCCTCGAAAGCGTTCGGCATACCGTCTTCCACGCTGTACAAGATCGCGCGCCGAGAGGGCATTCGCCTGGCGGCCCCGTTCAACGCGGCGCCAACCACCTGGTCGGCGGAGGATCTGGATCGTGCCTTGGAGGCGATCCGCGCCGGGCAAACGTCGGTGCAGAAGGCCAGCACCGAGTTTGGCATCCCGACCGGCACGCTCTACGGGCGTTGCAAGCGCGAGGGCATCGAGTTGTCACGCTCGAACCCCACACCCTGGTCCGAGGACGCGATGATGGAAGCCTTAGAGTCCGTTAAACAGGGACACATGTCGATCAATCAAGCCGCCATCCACTACAACCTACCGTACAGCTCACTGTATGGCCGGTTCAAGCGGGGCAAATACGATACGCCCAGCtcgggcggcggcggtggtggcagtTCGAcaagtgctgctgctgctgctgctaccggcggtggcggtggtggtggtggtggaggcggtggtggcggtggcggtggaggcgcTGGCGGAGCAAGCGCTAATGTTGGCGGTAGTCCCCAGATGGAGTTTAAGGTAGAACCTCAGCAAAACGATCATAGTCCAGAGAACACGCAACATTACAATCCTGCACTATCGACGTCCTCGACGCCTACGAGCAATACTCcaacgcagcagcagcagcagcagcagcaacaacaacagcagcaacagcagcaacaacagcaacagcagctcaCCCACCATTTAGTCCAACAATCACCGGCACCAGTCAGCATTCACATCAACGATGCCACCCATCACCATCTGGCGCACACTCATCAGCAgctccatcagcagcagcagcaacagcagatgGTGGTGatacaccagcagcaacagcagcagcagcagcaccatcacctGCACCATCAGCCGCagctaatacagcatcacatCATTCCGCAGCAGCATCACATCATCTATCAGCAGCCGCTGCAGCCGATCCAGCAGCAACCCCAGTACCATCCAATGTACCACATCATCAAGCAAGAGAACGATAGAAGTTGA
- Protein Sequence
- MRMASSCSKEECIRSLLRTAEQLKIKGLCEVGEPQYEQDYSPAVKRYKPYRSRSPPDNRHQHHHHQQPPPPPPPSSGSAGSASTGGGGRTGSGGAGPHGNNTNTSGSSSSSQSTGYSENGKGAKERSSAGGTVVGGGGGGGGGGGGGGGGGGGGGGGRSHYHPSQQQHHSLHHHHPHLHHPHHPHHHLHHLAGDEDDGSPSSVVVVETHDLTTTGPSASSATKDKLYHLQQQQHHHHQTHPQHHHHHHPPSSQQIGGKMASLGMGVGINGSVMGVVPMGYLDFAPEPPAPTATPVTEHVDINCAPSSHDTRDLSNSVPNDGDLRVKFETLRSLDPPNSVQLDNQAVAHQQQHQQQLHHQQQQAQQQLLHQQQQQHLLQQQQQQQQQQQQHRQTPQPAGASVPPNDHQRNSPPHIQQQQSAQQQQHIMMVDPQQQQQHHPTTHSPASSVSSSSSSQHPENLVTGSGGAGGGGGGGGSVTPGPTPNNGNSNGGGPNGTGGGDEMKSRLNLKQEIITDAADQQQTMEVEQDQSSMHGMVVTPEISGIMNQSQMSDMYQSDASEDSKAGILDGSSMQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGSSTSAAAAAATGGGGGGGGGGGGGGGGGGAGGASANVGGSPQMEFKVEPQQNDHSPENTQHYNPALSTSSTPTSNTPTQQQQQQQQQQQQQQQQQQQQQLTHHLVQQSPAPVSIHINDATHHHLAHTHQQLHQQQQQQQMVVIHQQQQQQQQHHHLHHQPQLIQHHIIPQQHHIIYQQPLQPIQQQPQYHPMYHIIKQENDRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00107614;
- 90% Identity
- iTF_00109052;
- 80% Identity
- iTF_00109052;