Acol000246.1
Basic Information
- Insect
- Anopheles coluzzii
- Gene Symbol
- -
- Assembly
- GCA_016097175.1
- Location
- CM027927.1:52699106-52706723[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.86 3.1e+03 -1.9 0.1 27 47 7 27 4 33 0.83 2 10 0.26 9.3e+02 -0.3 0.0 26 32 166 172 160 183 0.74 3 10 0.23 8.2e+02 -0.1 0.0 26 47 232 253 226 258 0.82 4 10 0.0039 14 5.6 0.0 21 45 255 279 250 282 0.89 5 10 0.00016 0.57 10.0 0.0 21 44 283 306 279 310 0.91 6 10 0.0028 10 6.0 0.1 21 45 311 335 307 340 0.89 7 10 0.12 4.2e+02 0.8 0.0 21 47 363 389 360 392 0.82 8 10 0.00011 0.39 10.6 0.1 21 52 392 423 382 424 0.82 9 10 0.027 95 2.9 0.0 22 44 449 471 445 475 0.88 10 10 0.00099 3.5 7.5 0.2 21 51 476 506 472 508 0.86
Sequence Information
- Coding Sequence
- ATGGCCAAGCAGTTCGAGTGTCACATCTGCCACAAGTCCTTCATGACGATGGTGAACCTGAACCTGCACATGAAGATACACGAAAGTGCAATAAAGCCGCTCGCAGCGACTCACATGTACGCGGGCCAGGCAGGCCTTGCCGGCAACTTGATTGCCGGATCGACCGCGGGCTACCATCACGGCGGGCAGCATCACAGTCAGCTGTCGCAGCATCTCGCGGTTCAAAGTGCCAGCGGCAGTGCGGACGGGCTGTGCCAGATATGCCACAAAACGTTCAGCACGGCGGACCAGTTCGCGGCGCACATGAAGATCCACGAGAATGAGTTTAAAAATCGTGCGCTTTATCATTCCGGTAGTGCGAACGATGGTGGCGAGGGAGCGCCAGCACCCACCAGTAATGGGGCTGGTGTCGGAGACCATTTCTACACCGCGTCACAGCCGCCACACCACCATCTGGGTCATGCACCGCCGCATCTCGATGCTAGCAAGGGCCATCGCTGCCCGATTTGTCACAAAATGTCCAACAACATCATCGAGCACATTAAACAGCACGAGGGTCAGCTGCAGGGCACGTCCGATGGGTCGGGTGCGGGGTATCATCCTACGAACGATGATTCCCAATCGTCGCTGGAAGAAGACAGCGACGGTGGTGGTGGTGGTGGCGCTGGTGGGGACGAGAGCCTGCGAAAGCACGAGTGCTTGATATGCCACAAAAAGTTCTCCAGCTCGGGCAACCTGGCGATACACATACGGGTGCATTCGGGCGAAAAGCCGTTCCGGTGCAGCGTGTGCGGCAAGGGCTTCATCCAGTCGAACAATCTGGCGACGCACATGAAGACGCACACGGGCGAAAAGCCGTACGCGTGCACCATCTGCGGCAAGAACTTTAGCCAGTCGAACAACCTGAAGACGCACATCCGGACGCACACGGGCGAAAAGCCGTACGCGTGTACGATCTGCGGCAAGCGCTTCAACCAGAAGAACAACCTGACCACGCACATGCGCACGCACCAGCTGGTGTGCATGGTGTGCGGGGTGCAGTTCATGCATCCGATCGATCTGGCCACCCACATGAAGTTCCACAACGACGAAAAACCGTACATCTGCTCGGTGTGCAACAAGGTCTACCTGAACCTGGACGAGCTGACCGAGCACATGAAGAAGACGCACAACCAGGTAAAGCCGTACCGGTGCCACATCTGCGACAAAACCTTTACCCAATCGAACAACCTGAAGACCCACATCAAGACGCACATCTTTCAGGATCCGTACAAGTGTCAGGTGTGCTCGCGCTCCTTCCAGAAGGAGGATGACTTCTCGCAGCACATGCTGGTCCACACGGCCGACAAGCCGTACGAGTGTACGTACTGCGGCAAGCGGTTCATTCAGTCGAACAACCTGAAAACGCACGTGCGCACGCACACGGGCGAAAAGCCGTACCGGTGCACGATCTGCGCGAAGCACTTTAACCAGAAGAACAATCTCAACACGCACATGCGCATCCACACGGGGGAGAAACCGTTCGAGTGTACCATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAA
- Protein Sequence
- MAKQFECHICHKSFMTMVNLNLHMKIHESAIKPLAATHMYAGQAGLAGNLIAGSTAGYHHGGQHHSQLSQHLAVQSASGSADGLCQICHKTFSTADQFAAHMKIHENEFKNRALYHSGSANDGGEGAPAPTSNGAGVGDHFYTASQPPHHHLGHAPPHLDASKGHRCPICHKMSNNIIEHIKQHEGQLQGTSDGSGAGYHPTNDDSQSSLEEDSDGGGGGGAGGDESLRKHECLICHKKFSSSGNLAIHIRVHSGEKPFRCSVCGKGFIQSNNLATHMKTHTGEKPYACTICGKNFSQSNNLKTHIRTHTGEKPYACTICGKRFNQKNNLTTHMRTHQLVCMVCGVQFMHPIDLATHMKFHNDEKPYICSVCNKVYLNLDELTEHMKKTHNQVKPYRCHICDKTFTQSNNLKTHIKTHIFQDPYKCQVCSRSFQKEDDFSQHMLVHTADKPYECTYCGKRFIQSNNLKTHVRTHTGEKPYRCTICAKHFNQKNNLNTHMRIHTGEKPFECTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00095775;
- 90% Identity
- iTF_00095775;
- 80% Identity
- iTF_00095775;