Acol004685.1
Basic Information
- Insect
- Anopheles coluzzii
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_016097175.1
- Location
- CM027926.1:3285159-3313459[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.13 1.8e+03 -2.5 2.9 29 82 69 118 65 142 0.35 2 4 2.4e-22 3.4e-18 65.6 9.9 1 55 204 258 204 272 0.79 3 4 8.3e-60 1.2e-55 188.6 14.5 102 299 273 458 269 459 0.92 4 4 0.046 6.5e+02 -1.0 2.8 210 246 478 513 462 532 0.60
Sequence Information
- Coding Sequence
- ATGTTACTGGACTGGCGGGGTGCGTGCGCCAGTCGTTCCCATACCGTGCAGAGTATTCGTGCACCAACACCACCACCATCAACCGGCCCCGGTGGCATACACCGCGGCGTACCAGCGCCAACAGCAACACCGCCACCACCAGCGCACACGACTTCAACATTTATCTTTTGCATTTCGTCATTTCTTGGCCTACTCGATCAGCAGGAGCAACAACAGAAACGCACCACCAACAGTAGTAACACGAGTAACACGACGCCACACACCACCGGTAGTACAGCAGGCGGCGGCAGGATGGAGAGCCCGAGTGCCGGCGGCAGGCGTCGCGGCAATTCGCGCATCAATGCCGAAGATCAGGCGCTCGATCAGATCGCAAAGGAGGGCAGCAGCATCCGGAGCGACAGCTACCACGATTCGTCCTCGCTGCAGGACCCGGACGATGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCGTGTCGCACACCGGCGACGAGTTCAGCTCCGAGGAGGATGAAGCGTTCGTCGAGCTGCTCGAGCGGGCCAGCGACATTGCCGAGGCACGATTAGCGGCACGGCGCCAGGCCCGTGCGGAGGCCCGCGAGATACGCATGCGCGAGCTGGAGCGGCAGCAGAAGGAGCTGGAGCAGACGGCGGACCGGGTGTTCGATCTGCAGCAGCAGTCGATCGGGCTGTCCGAGCCGGCGACCGCGCTGGTCGCGACGACGCCCCGGTCGAGCCGCATCCTGGCGCAGAATGCGGCGATGATTGCGAACGCCCAGCTCGACAACGAGCGGTCCTCGCTCAACTACCAGATACAGCTGCTGAAGGACAAGCTGGAGGAGGTGGAGGAGTCCCACTCGCAGCTGCAGCGCGAGTACCGGGAGAAGTGCCGCGACCGGGAGGCGCTCAAGCGCAACAACGACAAGCTGAGCGAGGAGCTGAAGCTCGTCCAGGGCCAGCTGCAGGAGCGGGACGCACTGATCGAGCAGCACGGGCTGGTCATAGTCACGGTGGAGAACGAGGACGGTACCGATGCGCACCGCGCCCTAGTCACAGCGGATAACGCGCAGCTGCTCAAATCCGTGCCCGGTTCCCTTGACGTAAGACTGAAAAAGTTTGCGGCCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAACGGTTCGCTCGTCGATGACGATTACGAGGATGCGCAGCGCGAAGCCAACAAGCTGATCACCGAGTATAAATACAAGCTGCAGAAGGCGGAGCAGGAGATCGCGAACCTGCAGGCCAGCCTGGCCCGCTCGGAAACGCAGGTGATCCGGTACAAGAGCACGGCCGAGGCGGCCGAGAAGGCCGAGAGCGATCTGAAGATCGAGCGAAGAAAGCTGCAGCGCGAGAACCGTGAAGCGATGGACCGGCTGGAGGAGCTAGAAACGTCAAACAATCATCTGCTGAAGCGGCTAGACAAGCTTAAGAACGTCAAGAGCAACATCCTGAAGGACATATGA
- Protein Sequence
- MLLDWRGACASRSHTVQSIRAPTPPPSTGPGGIHRGVPAPTATPPPPAHTTSTFIFCISSFLGLLDQQEQQQKRTTNSSNTSNTTPHTTGSTAGGGRMESPSAGGRRRGNSRINAEDQALDQIAKEGSSIRSDSYHDSSSLQDPDDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSHTGDEFSSEEDEAFVELLERASDIAEARLAARRQARAEAREIRMRELERQQKELEQTADRVFDLQQQSIGLSEPATALVATTPRSSRILAQNAAMIANAQLDNERSSLNYQIQLLKDKLEEVEESHSQLQREYREKCRDREALKRNNDKLSEELKLVQGQLQERDALIEQHGLVIVTVENEDGTDAHRALVTADNAQLLKSVPGSLDVRLKKFAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXMNGSLVDDDYEDAQREANKLITEYKYKLQKAEQEIANLQASLARSETQVIRYKSTAEAAEKAESDLKIERRKLQRENREAMDRLEELETSNNHLLKRLDKLKNVKSNILKDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -