Basic Information

Insect: Anopheles coluzzii
Gene Symbol: -
Assembly: GCA_016097175.1
Location: CM027927.1:38122328-38124232[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.3e-07 0.00075 18.8 0.0 5 33 270 298 269 307 0.89

2 4 0.03 53 3.3 0.0 6 26 365 385 363 386 0.87

3 4 5.3e-09 9.4e-06 24.9 0.1 2 39 452 488 451 492 0.92

4 4 3.6e-13 6.4e-10 38.3 0.1 2 35 592 626 591 634 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.3e-07	0.00075	18.8	0.0	5	33	270	298	269	307	0.89
2	4	0.03	53	3.3	0.0	6	26	365	385	363	386	0.87
3	4	5.3e-09	9.4e-06	24.9	0.1	2	39	452	488	451	492	0.92
4	4	3.6e-13	6.4e-10	38.3	0.1	2	35	592	626	591	634	0.90

Sequence Information

Coding Sequence: ATGGCACAGTCATCTTCCGGCCAGACGAAAACGATGCTAGTATGGCTCGACTACAGCCGGCACATGCTGAGCACGCTGCAGGACATTTACGCCGACCAGCAGTACACGGACTGCCGGCTGGTGGTGCCCGACGGTGAGCTGTACGCGAACCGTCCGATACTGAGCATGGCGTCCGGGCTGTTCGAGGCAATCTTCACCAGCATGGTCACGCTCACGATGGACCCGTCCACGGTGCTCATACCGGACATGACGTTCGCCAACCTGCAGCGCGTCGTGCAGTTCATCTACACCGGCCGGGTGACGCTGCAGCCGGACGAGGTCGTTCCGTTTATGGAGGCGTGCGGGCTGCTGCAGCTCCGGGGCGTCGAATGTTGCGGCAACCGCACGATGGGCATTTACATTGACGAATCGGGCCCGGAAGCTACGGCGGAGGACGGTGATCCGTTCGCAACGGCCCCAGAAACGGATCCGCTGCACATCGACCACACCCGGTACCCCGGGGCGGTGGAAAAGGCTGAGCCGCCACCATTAAAACTTATTGAGCCGAATCTCGAATCTACGAGTGAGCTATTTCCGGGCAATATCTGCAAAGAAGAGTTGATGGTATCGGACGAGGACAGTGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGATAAAAGTGACGCGGGCGAGGACAGCTCGATGGACGACAGCACGGACAGCGAGCAGGATGTGGAGCGGTGGATGGCGCTGGTGAAGGAGGTTGGAGTGGTTGACACGAGCCACCCGGGAGCGCCGAACTTCACGCCGTACCAGAACTGTCTCAAGCAGGCCATCGTAGCGGTCATTAGCGGGAATGTTTCGCCCAGAAGAGCGGCCGCCCGGTACAACGTACCCGCGGGCAGGCTGGTGCGCTGGACGCAGAAGGTAAAGCGAGCGATGAAAAAGAAACCAGAGACGGTAACTGCCAATGTGCCGCAGATGGTTGCCGCATACATTGACCGGAGCATACAGGAGTTCAAGCAGCTGCTGGAAACGAGCGATGCGGACGAACGTGTCAGCTTGCTGAGCGACCCATCAAATGTGCTGATGTACGACGTGCGGATTATGCTCGCGATCCACGACATCATGTACACCGGGATAAGCCTGCGCGAGGCGGTAACGCGGTACAAAAACAGTGTCGGTTTGCTGAGAAACCGGCTGTACAATCTAAAGAGTCAGCGAATAACGAACCATTTTAAGTCGTTCGGCATCAGATTGAAAAGTGCGGACAAACAGACAAACGAGCGACAGGCGGCAGGGAAGAAGCGTCGAAGGTTTGAGACGGAGTCGGGGAAGATTTTGAAAACAGCCGATCCCTCCCGGTACGAGGAGAGTGTGGCCAAAGCGCTGGAGGCGATTGGTTACGGTCTATCTATCCAGCAAGCCGCAAACCACTTTCGCATACACAAAAGTGCTCTATGGCGGCACGCAAAGGCCAAGAACATAACCTTTCCGCAGGAAAGGACAGTTCTAAGGAAGAAAGCAGCGACAAAAAAAGTTAAACCGAGCGGTGGTGGTTCAAGCGCTGCCTCCTCCTCCGCTACGAACAGTTGCCCCGTATTGCCGAAGCTGGTACCGTTTGGAAGCACTGGAGCCGTCACCACCGCCGAGCGCGTTAGGGATCGTGCAGGAGGTGGTGAGATCGCTCTAGCAACGGCTAGTACGGCGGCTCCTCCGATTGCTGTGCCAAGTTTGCTTCCCCTGCCCAAGTTGGTTCCGATTTCGAGCAGCTCGCCGCCAGAGTACGAGGAGCGGATGGAAGCAGCAATCGCTATGATATCGAATCAGAAAATGAGCTACCGGGAAGCGTCGGTAAAGTACAACATTCCCAAGGCGACACTGTGGAAGAAGATAAGTAAGATGGAGCCGAAGAAGTGA
Protein Sequence: MAQSSSGQTKTMLVWLDYSRHMLSTLQDIYADQQYTDCRLVVPDGELYANRPILSMASGLFEAIFTSMVTLTMDPSTVLIPDMTFANLQRVVQFIYTGRVTLQPDEVVPFMEACGLLQLRGVECCGNRTMGIYIDESGPEATAEDGDPFATAPETDPLHIDHTRYPGAVEKAEPPPLKLIEPNLESTSELFPGNICKEELMVSDEDSAEEEEEEEEEEGDKSDAGEDSSMDDSTDSEQDVERWMALVKEVGVVDTSHPGAPNFTPYQNCLKQAIVAVISGNVSPRRAAARYNVPAGRLVRWTQKVKRAMKKKPETVTANVPQMVAAYIDRSIQEFKQLLETSDADERVSLLSDPSNVLMYDVRIMLAIHDIMYTGISLREAVTRYKNSVGLLRNRLYNLKSQRITNHFKSFGIRLKSADKQTNERQAAGKKRRRFETESGKILKTADPSRYEESVAKALEAIGYGLSIQQAANHFRIHKSALWRHAKAKNITFPQERTVLRKKAATKKVKPSGGGSSAASSSATNSCPVLPKLVPFGSTGAVTTAERVRDRAGGGEIALATASTAAPPIAVPSLLPLPKLVPISSSSPPEYEERMEAAIAMISNQKMSYREASVKYNIPKATLWKKISKMEPKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00104498;
90% Identity: iTF_00100894;
80% Identity: iTF_00095754;