Aatr002857.1
Basic Information
- Insect
- Anopheles atroparvus
- Gene Symbol
- -
- Assembly
- GCA_015501955.1
- Location
- CALTRM010000021.1:1227044-1227979[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-18 5.6e-15 53.4 0.0 2 45 101 145 100 145 0.95 2 2 4 6.8e+03 -5.2 1.4 7 13 240 246 239 251 0.64
Sequence Information
- Coding Sequence
- ATGGTCAACAGCTACCAGTCGTCAAACATTTCCACCCCGACGTCGCCGCAGGCCGGTGGCGATCAGACGACAGCCGGGCTGGTCTACAGCACCGGCACCCCGAACCAATCGCCCCTGGGAACGGCAACGGCCACCACGACGACGGCAAACGCTGGTGGAGCGCCGGGCAATGGGGCGACAGTGGTGGCAGCAGGTGGAAACGGGGCGGCCGGTGGCAATGGAACCACGACCGGTACTGGCACAACCGGTACCGGCACAGCGCAGCCTGTCAAGCGGAAACGATCCGTCAACCCGCAGGGTGATGAAAATTTCCTACGAGCGCTCGAGGCGGTCCGTTTCGGAGGGATCGGGTTCTGTAAGGCGGCTCGCCTGTATGGCGTGAACAATCGTACGCTGTGGCTGGAGTACAAGAAGCGAGGGTACCCGATCAGCCGACCGAGCATTAAGAACCGCATCAAGCTGGAACCGAACATATCGCCGCCTCCGACAGCCACGACGCCGCCCGGGGACGagaatgcttccatggagcactacgacacggccctgtcatcccccgcgcttaatatgtccctgcaacagcagcagcagcagcaacatcaagcgactcagcagcaggtgaccgcagcgcagcagcaacaaactcaacagcagcagcagcatcagcaaacgcagcaacagcagcagggtaatgagacgactcatgctgcggcagcggcggctgcagcagcggccgtggcggcctcatccacctcgctgatgtgtcccccgcatGGGCAACCGATGGGCGTGATGGGGTTCGTGGATACGCGCCACGTTGACTTCACGACCACCGCCAGCCTGCACCCGATGTCCCGCCAGCGGTACCCGGACACGGCCACCATCAACATGAACACTGGCGCGGTCAATCTGCAGGGGCTCAACTTCAACTCCATGTAA
- Protein Sequence
- MVNSYQSSNISTPTSPQAGGDQTTAGLVYSTGTPNQSPLGTATATTTTANAGGAPGNGATVVAAGGNGAAGGNGTTTGTGTTGTGTAQPVKRKRSVNPQGDENFLRALEAVRFGGIGFCKAARLYGVNNRTLWLEYKKRGYPISRPSIKNRIKLEPNISPPPTATTPPGDENASMEHYDTALSSPALNMSLQQQQQQQHQATQQQVTAAQQQQTQQQQQHQQTQQQQQGNETTHAAAAAAAAAAVAASSTSLMCPPHGQPMGVMGFVDTRHVDFTTTASLHPMSRQRYPDTATINMNTGAVNLQGLNFNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00100898;
- 90% Identity
- iTF_00096301; iTF_00109057;
- 80% Identity
- -