Aara012109.1
Basic Information
- Insect
- Anopheles arabiensis
- Gene Symbol
- bab1
- Assembly
- GCA_016920715.1
- Location
- NC:88734328-88744893[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3 4e+03 -2.9 0.0 29 36 240 247 240 254 0.80 2 3 4.6e-13 7.9e-10 37.8 0.0 1 45 495 539 495 539 0.95 3 3 0.018 32 3.8 0.8 4 20 675 690 674 690 0.93
Sequence Information
- Coding Sequence
- ATGGGTAGCAGCGAAGGGCAAACGTACTGTCTGCGATGGAACAACCACAAATCGAACCTGGTCGAGATACTCGACGCGCTGATCAAGATGGAGTGCTACGTCGACTGCACGATCTACGTCGACGACCAGGTCCAGTTCAAGGCGCACCGGGTCGTGCTGGCCGCTAACTCGCCCTACTTCCAGTCGATCCTGCAGGACGTGCCGATGGATCACTGCAGCATCCTGTTCCCGGGCGTGCAGGAGTTCGAGATGCGCGCACTGCTCGAGTACATGTACACCGGCGAGGTGAACGTCACCCAAGCACAGATCCCGCGCATCATGAAGATCGCGGAACAGCTCGAGGTGAAGGGCCTGTACGATATGGCGGACCTGAAGGGGCGCTTCAGCAAAATGGTCGATGTGGATCAGCTGATGCGCGACCGTGACCCGGCCACCACACTGCACGcgagcagtagtagcagcagcaacagcaactacACCGGCAAGGGTTCGTCGTCTACTGCTACCGGTGCCGCTGCGGGTAGTAGCAcagccggtgctgctgctgctgctgcagcaaccgCCACATCCTCCTCCTGGCGCGACGTACCGccaaccagcagcagtggcagccaTTACCCCCACTACCAGCACCAGTCGTCGCCGGTCATTTCCACCTCCACAAATGTGTCACTCGCCCAAAGCAGCAGCTCCTCGCCACCGTACTCGTACAAGTCGCCCTACTCTAGCCTGTACTCCCGCAGCCCCGGCGCGGTGGAGCGTGATCGCGAGCGGGAAGAGCGTAGCCGCGACCGTTCCGCATCCTTCTCGCACGCGCCAGCCACGACCTCACCGCCGCCCCATCGCACCCAGTCCACGTCCGCCGGCTCGTCCGCCTCCTCCGTATCGGCACAGATCGCACTGCAGTCGCAGACCGCCAGCAGCAACCACCAGTCGTCCTCGGCATCCCACCAGTCCGGCAGTTCCGCCTCCTCAGCCTCCGCGCAACCATCGACCGTGGCGGCGGCTGCCGCCCTGGCCGCCGGTTGGCCCTCCCTCGGCCAGACGCAGCTGCACAGTATGCTCAGCTCGGCGTACGATTCCAGCACCGACATGAACCCGCTCAAGCGCAAGAAGCTCCAGTCGATGTCGAGCATGCTGCGCGACACACCGATCCTGCGCAACGTGCTCGCCCAGGCCAACCCGGCCGACTCGTCGCAGGCGGGCGGTGTGCCTGGGGCTGGGACAGCGCAGGCAACCGTGGCCACGATACAGTCCCAGTACCAGGGCGGCATGAAGTCGGATCCGGACCAGCCGAGCAGTCATCACTCCAACGGCAGTGGTTATAAGtcaATCAAGGACCAACCCCACTCACCGTACGCGGACAAATCGTTCGATGACGATCTGCTCGACTCGCCGCACAACTTTGGCGGCGACGCGCGGCTAGCATCGTACGtgccgcaccagcagcagaagccGGAGTGGAAGCGCTACAAGCAGTACACGCGCACCGACATCCTGAACGCGatcgagtgtgtgcgcaagggCATGAGTGCGCTGCAGGCGTCGCGCAAGTTCGGCGTGCCGTCCCGCACCCTGTACGACAAGGTGAAGAAGCTGGGCATTACGACGGGCCGGCCGATCAACCGGGCGCTCAAGCGGTCGCCCAGCTCGGGCGGCAGTCCGGCCTCCTTCCCGTACGGGCTGAGCGGTGCGAGCCACATGTTCGGCGGGCCGGGCAGCGGTGCGCCCGGCGGGCCCGGTGGCCATCCGGGCGgcgaccaccaccagcagctccCGTCCCAGTCGTCCCAGGAGGACGATGCGGCcgcggcggctgctgcggcggctgccgctgccgccgccgccatggCCCACCATCACGAGGCGGGCCGCATGATCAAGCTCGAGCACGGCAGCCACCACGGGCTGCCGCCGACCATCCCGCACCCGGCCGCCGCCCTGCTCGATCCCTCCTTCCTCCAGCAGGCGCTGGAAGCACGCGGCGGCGACATTGCCGGCCGCGAGGCACTGCACGCGATGGCGTTCGCGGCGGCCGCTCACGCCGCCGTCAACGGCATGAGCACGTCCCCGGGTACGCACGGGACGGCCCGCTCGCCGAGCCCGAGCGTGCTGATGAAGTACATGCGCTCCGTGTCGATGAGCTCGCCCGAAGACGATCGGCACCATtcggcgcagcagcagcagcagcgggaagCACGCGATCTTGCGGAACGCGAGCGCCGAGAGCATCACAACGGGTCGGAACCGGCCTACGCCAGGCGGGAGCATCATCCGATGGAGCAGGACGACGAACCGGGCAGCGACTGTGGCGAACGGCCATCGAGCGGCGGTCTGGCCGAAGGCCAGGACGATCACGTGGAGGATCTGTCCATGGGCCCGAAGCGGGACTCGGAAGAGCGGGGACCATCCGTCTCACCACCGCCGGCAGCGGCGGTGTCCGTCGTACGGTCGGCGGTTGCACGGTCCCGATCACCCTCACCTGCACCCTCGCTACCGCAACAACctccccagcagcagcagcagcagcagggtgtCATTGTGCCAGCGCCCGGTAAGTTAAAGGAAGACTACAACATCACCATCAAGCGGGAAATCATTGCGGACAGCAATGCGCCCGCAGAATCGTCGTAG
- Protein Sequence
- MGSSEGQTYCLRWNNHKSNLVEILDALIKMECYVDCTIYVDDQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQEFEMRALLEYMYTGEVNVTQAQIPRIMKIAEQLEVKGLYDMADLKGRFSKMVDVDQLMRDRDPATTLHASSSSSSNSNYTGKGSSSTATGAAAGSSTAGAAAAAAATATSSSWRDVPPTSSSGSHYPHYQHQSSPVISTSTNVSLAQSSSSSPPYSYKSPYSSLYSRSPGAVERDREREERSRDRSASFSHAPATTSPPPHRTQSTSAGSSASSVSAQIALQSQTASSNHQSSSASHQSGSSASSASAQPSTVAAAAALAAGWPSLGQTQLHSMLSSAYDSSTDMNPLKRKKLQSMSSMLRDTPILRNVLAQANPADSSQAGGVPGAGTAQATVATIQSQYQGGMKSDPDQPSSHHSNGSGYKSIKDQPHSPYADKSFDDDLLDSPHNFGGDARLASYVPHQQQKPEWKRYKQYTRTDILNAIECVRKGMSALQASRKFGVPSRTLYDKVKKLGITTGRPINRALKRSPSSGGSPASFPYGLSGASHMFGGPGSGAPGGPGGHPGGDHHQQLPSQSSQEDDAAAAAAAAAAAAAAAMAHHHEAGRMIKLEHGSHHGLPPTIPHPAAALLDPSFLQQALEARGGDIAGREALHAMAFAAAAHAAVNGMSTSPGTHGTARSPSPSVLMKYMRSVSMSSPEDDRHHSAQQQQQREARDLAERERREHHNGSEPAYARREHHPMEQDDEPGSDCGERPSSGGLAEGQDDHVEDLSMGPKRDSEERGPSVSPPPAAAVSVVRSAVARSRSPSPAPSLPQQPPQQQQQQQGVIVPAPGKLKEDYNITIKREIIADSNAPAESS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00101774;
- 90% Identity
- iTF_00093560; iTF_00102296; iTF_00102462; iTF_00107084; iTF_00106922; iTF_00095740; iTF_00095585; iTF_00100899; iTF_00101058; iTF_00104307; iTF_00104482;
- 80% Identity
- iTF_00093560; iTF_00102296; iTF_00102462;