Aara002716.1
Basic Information
- Insect
- Anopheles arabiensis
- Gene Symbol
- bab2
- Assembly
- GCA_016920715.1
- Location
- NC:75917456-76002193[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7e-12 1.2e-08 33.9 0.0 2 39 700 738 699 742 0.90 2 4 2.3e-12 3.9e-09 35.5 0.1 2 39 754 791 753 794 0.94 3 4 3.4e-18 6e-15 54.1 0.0 3 45 810 853 808 853 0.97 4 4 2.4e-17 4.1e-14 51.5 0.0 1 43 860 903 860 904 0.96
Sequence Information
- Coding Sequence
- ATGGATACCAAAGCAGCATCAGCGGGACCCGCCCCGACGCATTTACCTTCGTCCACATATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTAAGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAATCATTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTTCTGTCGGCGTGTTCGGCGTACTTTCAAAAAATTCTCCTGGACAACCCGTGCAAGCATCCGACCATCATACTGCCGGCCGATATATGCTTTTCCGATCTGCAGTTCATCATCGAGTTCGTGTACCGCGGGGAAATCGATGTCTCCGAGGCAGAGCTGCAGAGCTTGTTACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTACGAGCAGGACTACTCGCCCGCACTAAAGCGCTACAAACCGTACCGGTCACGGTCGCCCCCGGACAACCGGcatcagcaccatcaccaccagcaaccaccgcccccaccaccaccctccggTGCGTCGGGATCGACCAGTGGTGGCCGATCCGGTTCGTCCGctgcaggagcaggaggaTCACACggaagcggtggcagcagtggcggcaacagcagcaacaacaacaacaacaacaacagttcGTCTTCCTCCCAGTCGACGGGATACAGCGAGAACGGTAAAGGCTGCAGTACCGGCAAgggcggcagtggcggaggTAGCGGCGGTCTAGGATCTGGGGCAGGGCGCACCCTCTACCATCCCTCACAGCACCATCACCCGCTGCACCATCATCTGCATCATCATCCGCACCACCATCTGCATCATCTGCACCATCCCCCGCCACTCGGCGGTGACCCGCGGACGACGACCACCCCTGGCCATATTGTcgaggacgacgatgatggATCGGTGCTAGTGGTCGAAACGCACGATCTGACTACGACGGGATCGAAGGATAAGCattatcagcagcagcagcagcagcagcaacaccatcaaTCGCAACAAGCGCACCACCATCCTCACCcgcatcatcctcatcatccgCAGCAGCATCCACTCGGTAGCAAAATGGCCAGCCTAGGGATGGGCGTTGGAATAAATGGTGGTTCCGTTATGGGCGTGCCGATGGGATATTTGGACTTTGCACCAGAGCCTCCAGCACCGACGGCGACGCCAGTGACAGAGCATGTGGACATTAATTGTGCGCCTAGCAGCCACGATACACGTGATCTGTCCAATTCTGTGCCAAACGATGGTGACTTACGAGTGAAATTCGAAACGTTACGTTCGCTAGATCCTCCGAATGCGGTGCAACTGGACAATCACACAGTCagccatcagcagcagcttcaccatcagcaacagcaggcgCAACAGCAGGCGCAACagcaggcgcagcagcagcagctcctgcagcaacaacagcatttactgcaacagcagcagcaacagcagcagcagcagcagcaaagacaGACACCGCAGCCAGCGGGtgctcaacagcagcagaatgACCATCAGCGGcactcgccgccgcacatgcagcagcagcaacaaccacagcagcaCGTAATGCTGATggatcaacagcagcagcagcaccacccaACCACCCATAGTCCGGCGTCAAGTGTGTCGTCCTCATCGTCCAGCCAGCATCCGGAGAACTTGGTTACTGGCAGCGGTGGTGCTGCCGGCTCGGTGACGCCTGGTCCGCCCACCAACAATAGCAACGGCAACGGAGCGGGCGGCGATGAGCTGAAGCCGAGACTGAACCTGAAGCAGGAAAACATCagcgatgagcagcagcatcaaacgATGGAGGTCGAGCAAGACCAGTCCTCGATGCACGGCATGGTGGTAACGCCGGAAATTTCGGGCATCATGAACCAGAGCCAAATGAGCGATATGTACCAGTCGGATGCCAGCGAGGACTCGAAGGTGGGCATTCTGGACGGTTCCTCGATGCAGTACACCAATCTGACCAGCCCCAACGAAGCGAAAACGCCTACCGGACCGAAAACATGGACCGCGGAAGATATGGAGTCGGCGCTCGAAGCGCTACGCTCTCACAACATGAGCTTGACTAAGGCCTCTGCTACGTACGGTATTCCATCGACGACACTGTGGCAGCGGGCGCACCGGCTCGGCATCGATACACCGAAAAAGGAGGGTCCGTCCAAGACGTGGAACGAGGACTCGCTCAACAGCGCACTGGAAGCGCTACGGACGGGCACGATCTCCGCCAACAAGGCCTCGAAAGCGTTCGGCATACCGTCGTCGACGCTGTACAAGATTGCGCGCCGCGAAGGCATCCGCCTGGCGGCGCCGTTCAATGCCGCACCCACCACCTGGTCCGCGGAAGATTTGGACCGTGCCTTGGAAGCGATCCGTGCCGGGCAGACCTCCGTACAGAAGGCCAGCACCGAGTTCGGCATTCCCACTGGCACACTGTACGGGCGCTGCAAGCGCGAGGGCATCGAGCTGTCCCGATCGAATCCCACGCCCTGGTCCGAAGACGCGATGATGGAGGCGTTGGAATCTGTCAAGCAAGGACACATGTCCATCAATCAAGCCGCCATCCACTATAACCTACCGTACAGCTCACTGTACGGCCGGTTCAAGCGCGGCAAGTACGATACGCCCAGCTCgggaggcggcggcggtggcagttcgtccaatgctgctgctgctgctgctaccggtggagGCGGCGCGGGCAGCGGTGGCGGTAGTGGCGCCGGCAGCGCCGCTAGTGCCGGAACAGGTGGCAATAATGTTGGCAGTAGTCCCCAGATGGAGTTTAAAATAGAACCACAGCATAACGATCATAGTCCAGAGAACACGGTAAATTACAGTtattattaa
- Protein Sequence
- MDTKAASAGPAPTHLPSSTYPATSPYSKGARSSHQYFSLRWNNYQSNMTSVFHELLESQSFVDVTLACEYNSLKAHKVVLSACSAYFQKILLDNPCKHPTIILPADICFSDLQFIIEFVYRGEIDVSEAELQSLLRTAEQLKIKGLCEVGEPQYEQDYSPALKRYKPYRSRSPPDNRHQHHHHQQPPPPPPPSGASGSTSGGRSGSSAAGAGGSHGSGGSSGGNSSNNNNNNNSSSSSQSTGYSENGKGCSTGKGGSGGGSGGLGSGAGRTLYHPSQHHHPLHHHLHHHPHHHLHHLHHPPPLGGDPRTTTTPGHIVEDDDDGSVLVVETHDLTTTGSKDKHYQQQQQQQQHHQSQQAHHHPHPHHPHHPQQHPLGSKMASLGMGVGINGGSVMGVPMGYLDFAPEPPAPTATPVTEHVDINCAPSSHDTRDLSNSVPNDGDLRVKFETLRSLDPPNAVQLDNHTVSHQQQLHHQQQQAQQQAQQQAQQQQLLQQQQHLLQQQQQQQQQQQQRQTPQPAGAQQQQNDHQRHSPPHMQQQQQPQQHVMLMDQQQQQHHPTTHSPASSVSSSSSSQHPENLVTGSGGAAGSVTPGPPTNNSNGNGAGGDELKPRLNLKQENISDEQQHQTMEVEQDQSSMHGMVVTPEISGIMNQSQMSDMYQSDASEDSKVGILDGSSMQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGSSSNAAAAAATGGGGAGSGGGSGAGSAASAGTGGNNVGSSPQMEFKIEPQHNDHSPENTVNYSYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00108305;
- 90% Identity
- iTF_00102454;
- 80% Identity
- iTF_00093548;