Aaqu010882.1
Basic Information
- Insect
- Anopheles aquasalis
- Gene Symbol
- -
- Assembly
- GCA_002846955.1
- Location
- NJHH01003147.1:8931-13341[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.2e-05 0.002 18.0 0.3 2 23 404 425 403 425 0.95 2 12 0.25 16 5.7 0.2 1 23 434 456 434 456 0.97 3 12 2e-05 0.0012 18.7 0.3 2 23 464 485 463 485 0.97 4 12 2e-06 0.00013 21.7 0.9 1 23 491 513 491 513 0.99 5 12 0.00013 0.0081 16.1 0.6 1 23 520 542 520 542 0.98 6 12 9.3e-05 0.0058 16.5 1.1 1 23 548 570 548 570 0.97 7 12 9.8e-06 0.00061 19.6 0.3 1 23 576 598 576 598 0.98 8 12 6.4e-06 0.0004 20.2 1.1 1 23 604 627 604 627 0.96 9 12 3.6e-05 0.0023 17.8 2.6 1 23 633 656 633 656 0.97 10 12 4.7e-05 0.003 17.5 2.8 1 23 662 684 662 684 0.99 11 12 0.00011 0.007 16.3 3.0 1 23 690 712 690 712 0.97 12 12 0.00019 0.012 15.6 0.6 1 23 718 742 718 742 0.92
Sequence Information
- Coding Sequence
- ATGAGACACGACGATCCAGCTTCGGCGAAGCTGGAACAGACGGAACCGTTCCACTTCCCGTACTGTTACATCTGCAACACGCCCGACTTACAGATGGAAACGGGCAACTTGTGTATGTTGTTTCAATCGGAACAAAATGGATATTCCGCGGCCAAAACGCTAACCGAAATCCTGCAGATTGATGTCACACCGGAACTGTGCCATTCGCAGCTCATCTGCATCAACTGCAACCTGCTGTGCGTCGAgtatcagcagctgctggaacggGTGGAGACAATAAGGATCCAGATGACGGTGGCCTACAATCAAACCGTCATGAAGCTGGCGGGTCTTACGGAGAAAGTCCTGAAAGACACACCCGTTACCGATGAGAACCTCGAGCAGGCACTGCAAAGCATTGAAAAAGGATTTATGTCCATCGATGAGGTGTTCCATATGGAGGGTCTCGTCGCTGATTCCATCATCGAAGATCCGTCCTCGGAACAAATTGAAGGTGTGCTGCCAAAGCTAACGCTCGATTGGCATGGGGCCACGCCGGACCAACCCATCGATTCGTCCGTTCTGTTAAGTTCAGCTACAATCGCCGATGAGCAACCGCAGCACGTTGCCGTTCAAGAGCCGGAACCGCCAATTCTTACCACCGTTCAGGACGTTGCTTCAACACAGTTGGAACCGCAGGAAACGAACCTGCTAGCACCGGACACCGAAACTCCTGTTGACTGTGATAGTAGCAACGACGATAAGCTTCACTCGCTGATTGCGGATAGAATCGTCGAAGTAAAGGCAGAAGATGGTACGGTTATGTATTGTGTTTACGAGAATGTAATCGAATCGTACAGTGATCAAGAAGAAGCCCCACCGGAAGCGATGATGGCCAGCAatgacgatgccgatgttgtgacgaacgatgatgatgatgtggtagAGTACGATGAAGTGATCGTCGAGAGTTCCGAACCGGCTGCGACGGAGCATACGCTTGAggagcaaccaccaccaccgacttCCCTTTTGGATGCAGTTGAAGAACAGCAGGCACCGGTTGACGGAAACGAGAGGAACGAATCTGCTGCCATCACGCAACCGCTCTTTTTCAAGGTGGAAGACGTGTACTACTGCACAACCTGCAGTTCCGTGGGCAAGATGAACGGGTATCACGTGAAGAGCATCGCACACCACCTGAAGGTGGAGCACGGTGAGAAGATACTCGTGTGCGAACGGTGTGATGCGGTGTTTAGCCGCCGATCGGCCTACAACAAGCACATGGACCAGCACACGGCCGACGACTGTGGAGGAGATTTTAACTGCGACATCTGCGCCATCAAGCTAGACTCTGTGCGAGCGTTGCGTATCCATCGTAAAAACCACGTTCCGGCCACCAAGCTGTGGTCCTGTGAGCTCTGTGAGAAGAAGTACGTCACGAAGAATCTCCTGGAGGTGCACATGAACACGCACACCGGGGAGCGGCCGTACCAGTGCACCGTTTGTTCGAAGGACTTCTCCTCCAAGTACGTGCTGGCAGTGCACATGAAGACCCACAGTGAACGGACGCGGAACTTTGTCTGCACGGTGTGCAATGCGTCGTTCTTTAAGCGCAACAACCTGGTACAGCACGAGCGGATCCATCTCGGGCTAAAGGAGTACATGTGTCGCGATTGCGGTAAAGAGTTCCTGTCGCAGCATAATCTTAACGTGCACCGAATCATCCATGCCGGCAATAAACCGTTCTCGTGTCGGACGTGTGGTAAATCGTTTGCTCGGAAAGCGGAAATGATTGATCATGAGCGGATACACACGGGTGAGAAACCGTTCGCTTGTGATATCTGTGATGCACGTTTTGCCCAGCGGTCGAACCTGCACTCGCACCGGAGGGTCACGCATATGAACGATAAGCGGTTCAAGTGTGAGATCTGCGGTGCCTGCTTCAAGCGACGCCGGTTGCTGGTGTATCACGAGCGATCGACACATACCGGGGAGCGACCGTACAAGTGTGATCAGTGCACAGCTACATTCGCGTATCCGGAGCACTTCCAGAAGCACAAACGCATCCACAGCGGTGCGAAACCATTCTCCTGTGAGGTCTGCCACAAATCGTTCAACAGCCGGGACAACAGAAATGCACACCGGTACGTGCACAGTGACAAGAAACCGTTCGAGTGTGTCATTTGCGGTGCCGGGTTCATGCGCAAGTCGCACCTGTACGGACATATGCAAAAGTTCGGTCACTTGAACGAtaccatcatcgtcaaccAGCCACACATTAAGCCGAACGATACGCTGGACTTTACTCACGAATCCTTCACCATCGCTAGCGCCGATGCATTGGCGGATGATACGGGTGAACCCATtgaaccggcggcggcggtagtAGGCTGTAGTGACGAAGGTACGGCCAGCCATCACTCACCACGAGTGATCatcgaaggcgaagaagacACGACTGAGACAATGGATGACATTATCGAAACGGATGAGTACTACATCGAGCAGGATGAGGACTATGTCGAAGGCATGCTCGAAGATACGAGCAACAGTACTCCGGTTCCCGTGGCGGATCTAcaggcggatgatgatgacagtgTCATCGAGTAA
- Protein Sequence
- MRHDDPASAKLEQTEPFHFPYCYICNTPDLQMETGNLCMLFQSEQNGYSAAKTLTEILQIDVTPELCHSQLICINCNLLCVEYQQLLERVETIRIQMTVAYNQTVMKLAGLTEKVLKDTPVTDENLEQALQSIEKGFMSIDEVFHMEGLVADSIIEDPSSEQIEGVLPKLTLDWHGATPDQPIDSSVLLSSATIADEQPQHVAVQEPEPPILTTVQDVASTQLEPQETNLLAPDTETPVDCDSSNDDKLHSLIADRIVEVKAEDGTVMYCVYENVIESYSDQEEAPPEAMMASNDDADVVTNDDDDVVEYDEVIVESSEPAATEHTLEEQPPPPTSLLDAVEEQQAPVDGNERNESAAITQPLFFKVEDVYYCTTCSSVGKMNGYHVKSIAHHLKVEHGEKILVCERCDAVFSRRSAYNKHMDQHTADDCGGDFNCDICAIKLDSVRALRIHRKNHVPATKLWSCELCEKKYVTKNLLEVHMNTHTGERPYQCTVCSKDFSSKYVLAVHMKTHSERTRNFVCTVCNASFFKRNNLVQHERIHLGLKEYMCRDCGKEFLSQHNLNVHRIIHAGNKPFSCRTCGKSFARKAEMIDHERIHTGEKPFACDICDARFAQRSNLHSHRRVTHMNDKRFKCEICGACFKRRRLLVYHERSTHTGERPYKCDQCTATFAYPEHFQKHKRIHSGAKPFSCEVCHKSFNSRDNRNAHRYVHSDKKPFECVICGAGFMRKSHLYGHMQKFGHLNDTIIVNQPHIKPNDTLDFTHESFTIASADALADDTGEPIEPAAAVVGCSDEGTASHHSPRVIIEGEEDTTETMDDIIETDEYYIEQDEDYVEGMLEDTSNSTPVPVADLQADDDDSVIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00098517;
- 90% Identity
- -
- 80% Identity
- -