Apur014347.1
Basic Information
- Insect
- Anomoia purmunda
- Gene Symbol
- -
- Assembly
- GCA_951828415.1
- Location
- OX639993.1:184023036-184025557[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-07 0.00012 23.6 0.0 3 40 17 54 16 59 0.91 2 2 1.5 1.2e+03 1.1 0.0 23 34 369 380 362 389 0.87
Sequence Information
- Coding Sequence
- ATGCCTCgaaattatattctaaaaaaaccACTGCCGTCATACTCATTAGATGACGTTGCCAAGGCAGTCAatgatgtgaaaaataaaaacatgacctTCAGGGCAGCGCAGGAGGCTTATGGAGTACCTGTATCTGTTATTTATAATAGGATAAGTGGCAGGAAAAACTCACTTGAGAAAATTGGACAAGGCCGGGGAAATGCATTGACATTAGAAGTCGAGAAAGAAATTGTTAAGCTCCTCCTCCAACGATCTTCAAGCGGTTATCCTTGCGATAAAGAAGAGTTGCGGGATTTGATTTCCCAGTATGTTATTAATAACAACCTAAAGACCccttttaaaaactcaaaacccGGTGAGGAGTGGTATCGAAACTTTATGAAAAGACATCCTACACTATCCCTTAAGAAACCGGAGCTACTAAAGAAATGCCGAAAAGATGCTAGAAAACCTGAAATTATTTACGATTTGTATAATAAGTTAAAAGACGTTGTAACGATGCATGGGTTAGACGAGGAAAAGTCGAGCTTCGTATTTAATGCTGATGAAAGTGGATTTTGTAGTGATCCTAGCAAGCTGAGGGCAATAGGAGAAAAAGGAGTTACACTAAGTAGGCTTACTGGCGGATCAGGACGTGTATCAACCACGGTTTTGGCATGTGTTTCAGCAGATGGCTTTGCTTTGCcccctttaattatttttaaaggcgCAGCAGTCCAAGCACGATGGACCAATGAAGAAGCGTATCCTGGGACTTTGTATGGAGCTTCGAAGAACGGTTGGATGGAAGAACCACAGTTCTTCCATTGGTTTATCAACGGGTTTATTCCTCATGTTGTACGTCTGagagcagaaaaaaaactttctgaTCAAACTGCTTTGTTACTCTATGATGGGCATTCCAGCCATGTCAGTGTCAGAATAGTGGAAAACGCAATGAAAAACAACATTCAGCTCCTTCGATTCCCAAGTCACTTGACTGATAAAATCCAGCCGTTAGACAAAGCTGTTTTCGGTCCGGTTAAGAGGGCTTGGGACAAATTGTTGGTTAGACATGGAGAAGATATGATAGGCAAAGCTGCTTTATCCGTTCACACTGAAATTGCCAATTTATTCGCAGTTCCTCATAGTTCTCTTAACGCAACTCCTAAAAGCAAAATTACTCCTCGTTTGAAGCAATTAAAATATGGAGAAATATTGACATCTGACGAGGTTTTGCAACGCTTAAAAGAAGGTGAAGAAAAGAAGAGGTTAAAAAGTGAGCCAAAAAAGAAGAGTCTGAAGAAAAAGCAAACAACGAAAAAATCTTTAGCTTCAAAAAAGAAGGTGCTTGTATATTCATCTTCTGAAGACGAAAATCTGAATTACACGCTAGCAGATGATGATTTAGCTGACATAAACTGGGGCGATGAAGGAAACCGAGAAGATCCTGATGAAGTAGAGATGATGGAAGTCAAACCAATTGAAGACCTTGAAGTGGGAGAATTCATTTTAGCATCGTTTAAGGGAGGAAAAAGAAActcgatatattttaaatacgtaTGCCGCATAGAAATGGTACATATTAGAGATGCAGAAATAAAAGTTCAAGGTCTCGCTGCTCTTATTCCTTCGAACACTATAtttaaagttatagaaaaagatATTAGCTTCATCAAACTATCTCAAGTCGTTGCTATGCTTCCACCGCCAAAGGAGACACTGGATGATAATGGTAACACCATTTACACCTTTGACAAATTTGTCCCAGTCATGGAAATTAACACTTAA
- Protein Sequence
- MPRNYILKKPLPSYSLDDVAKAVNDVKNKNMTFRAAQEAYGVPVSVIYNRISGRKNSLEKIGQGRGNALTLEVEKEIVKLLLQRSSSGYPCDKEELRDLISQYVINNNLKTPFKNSKPGEEWYRNFMKRHPTLSLKKPELLKKCRKDARKPEIIYDLYNKLKDVVTMHGLDEEKSSFVFNADESGFCSDPSKLRAIGEKGVTLSRLTGGSGRVSTTVLACVSADGFALPPLIIFKGAAVQARWTNEEAYPGTLYGASKNGWMEEPQFFHWFINGFIPHVVRLRAEKKLSDQTALLLYDGHSSHVSVRIVENAMKNNIQLLRFPSHLTDKIQPLDKAVFGPVKRAWDKLLVRHGEDMIGKAALSVHTEIANLFAVPHSSLNATPKSKITPRLKQLKYGEILTSDEVLQRLKEGEEKKRLKSEPKKKSLKKKQTTKKSLASKKKVLVYSSSEDENLNYTLADDDLADINWGDEGNREDPDEVEMMEVKPIEDLEVGEFILASFKGGKRNSIYFKYVCRIEMVHIRDAEIKVQGLAALIPSNTIFKVIEKDISFIKLSQVVAMLPPPKETLDDNGNTIYTFDKFVPVMEINT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00091138;
- 90% Identity
- -
- 80% Identity
- -