Aque004252.1
Basic Information
- Insect
- Andricus quercuspetiolicola
- Gene Symbol
- -
- Assembly
- GCA_035222095.1
- Location
- JAWWEA010000003.1:35053617-35064860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.2e-05 0.013 18.1 4.4 3 23 71 91 71 91 0.99 2 22 0.011 3.3 10.5 0.5 1 23 127 149 127 149 0.97 3 22 0.00011 0.033 16.8 1.4 1 23 155 177 155 177 0.96 4 22 5.6e-06 0.0017 20.9 0.8 1 23 184 206 184 206 0.98 5 22 0.0084 2.6 10.9 2.4 1 23 212 234 212 234 0.98 6 22 0.00032 0.099 15.3 0.8 1 23 240 262 240 262 0.98 7 22 8e-06 0.0025 20.4 2.9 1 23 268 290 268 290 0.96 8 22 0.00076 0.23 14.1 2.4 1 23 296 318 296 318 0.97 9 22 2.1e-06 0.00065 22.2 1.2 1 23 325 347 325 347 0.97 10 22 2.9e-05 0.0088 18.6 1.4 1 23 353 375 353 375 0.98 11 22 5.8e-06 0.0018 20.8 1.8 1 23 381 403 381 403 0.98 12 22 0.00063 0.19 14.4 3.2 1 23 611 633 611 633 0.98 13 22 3.5e-05 0.011 18.3 0.8 2 23 650 671 649 672 0.95 14 22 5.9e-05 0.018 17.6 1.4 1 23 678 700 678 700 0.98 15 22 1.4e-06 0.00044 22.7 1.7 1 23 706 728 706 728 0.98 16 22 6e-05 0.018 17.6 0.8 1 23 734 756 734 756 0.97 17 22 1.9e-05 0.0058 19.2 1.1 1 23 762 784 762 784 0.98 18 22 3e-05 0.0091 18.6 4.1 1 23 791 813 791 813 0.98 19 22 5e-07 0.00015 24.2 0.4 1 23 819 841 819 841 0.96 20 22 0.0068 2.1 11.2 0.5 3 23 849 870 847 870 0.95 21 22 1.3e-07 4.1e-05 26.0 1.2 3 23 878 898 876 898 0.97 22 22 2.8e-05 0.0085 18.7 2.0 2 23 904 925 903 925 0.97
Sequence Information
- Coding Sequence
- ATGGACATCAAAGATGAAAAATGCAAGTTTGAATCAAATGACCTAGACTACGCATTTGAAGGTATCATAATTAAATCTGAGCCTCCTGAGTATGCTCCAGTTGATGAAGCCAACTTCGAAGAAGACAAGAAGCCACAAAATCTCTCTAGTAAAGTGAACGACGATACATCTATTTTTAAATTGCCTCCAGAACCTAAAGAAAATAACTGGTGCCATCTATGTCAAAAAGGATATAAAAATCGCGACAGTCTGAAAAGACACATAAGGAGACACAATGCAAAGCAAAAGGGTGCAGGCGAAAATACTGTACGCAAATATACTGTAGGTAAAAATACTGTAGGCAAAAAAACTGTTGATAGCAAAATTGAAGGCAAACTTTTCTGCTGCAACGTTTGCAATAATGGTTTTGAAACAGAAGGCGAGCTTGATATGCATATAAAAGAACACTCAAGATACACGCCTTTCGAGTGCGATTACtgtagaaaaaaattcacaaatcgtCAGAGCATGAAATTGCACATAATTGCTCATATGGCAGGTGGTGGGCCTTACAAGTGCGAAGTTTGTGCAAAAGCTTTTGTCAGGTCCTACAGTTTGAAGATACATCTGCGATTTCACTCAGAAGATAAACCCTATGAATGTAATATTTGCAAGCAGGGCTTTATAAGAAAAAATGACCATCATGCACACATGTTAATTCACGAGAACAAAAAACCTTTTGTTTGTGATATTTGCAACAAAGCTTTTCTCAGGATGTCTTACCTAAATAAtcacaaaaagatacatttagtAGACAAACCCCATGCTTGCAAAGTATGCGGTAAACGATTCATTAGGATACATGATCTTACAATTCATATGCGCTATCACACTGGCGAAAAGCGCTTCGAGTGCGatatttgcaagaaaaatttcaagaaatatcaaacaATGAAAGTGCACATATACTCTCATATGGGATTTGACCAAAGGCATAAATGTCCAATTTGTCCAAAAGAGTTTTCAAGGTCCAACTATTTAAAAGAGCATTTACAAGGACACTCGGGTAACAGACCATACGAATGCGAATTTTGCAAGAAGACTTTTGTCAAAAGGTACAGCTTAAATTCACACGTGCTTATCCACCAAAAGACAAAAGATTTCATTTGTGATATTTGCAATAAAGGTTTTACAAAGTCGTATTATTTAAAGTCTCATAAAAGGGTACATGGGGGGCAGCAGATCGAGAAGCCTTTCCAGTGTGAACTCTCGTCTCCAAATGTCGAGAGAAGTTACGAAGATGCAATGTTTCGCACGGTTTATTTGAACAGCCATAAGAGTGGGAAGAACGGCGATCCATGTGTGGTTGAAATTGTGCCAATCACTGTCCGGAACATCGATCTTAGGAATGCAGTACAAACAAAAGAGGATAGTACTATGCAGGTTCAAGAGGAGGCGAGTATTGAAAAAGCGACTGACTCTGGAAACGATCTTGGTAATGAAGTGCAAAAAAAAGAGGATAGCACTATGCAGGTTCAAGAAAAGAAGAGTCGTGAGAAAGCGACTGATTCTGGAAACTCTAGTCTAATTTATGTGAAAACCGAACCTAGTGATAGAATAGATCCAACTTTCGAAATAGAAGTTGAAGATGTAAAAttttcACCAAACCACAAGGATGACATCTGCACCGAAGTCATAATCAAAGCTGAGCCTCCAGAACCAGATTTAGTCgacataaaagaaaatttgatagGAGATCTTAGCAAGCTATCAAATGACAATCATAAAAATGACCCTCCAAAGAATCACGCAAATAGTTCAGAAGCTCCTGAAACAAAACTTGAAAAACGACACCGGTGTGATCAATGTCGACAAGAATTCAAAAACCCTCAAAGTCTGAGCAACCACAAGCGCATCCACACTAAAAAGAAACGCAAAATGTCCCGTAAAAAAGATCCCGTTCCTGACAAGTGCCCAGTTTGTGCCAAAGAATTTACAAATCCTAACAGTTTAAAGGTGCATATTTTTCGACACCACTCAGAGGGAAAAGCCTTTGAATGTGAAGTCTGCAAAAAGTGCTTTCCACTGAAGTATGATCTAGACGCCCACATGTACATGCACACTACAAAAAAAGCTTTTGTTTGTGACATTTGTTCCAAAGCGTTTCGGAGGTTGTCGTATCTCAATAATCATAAAAAGACACACTTGGAGAAAAGGCCCTACGCGTGTAAAATCTGTAGTAAGCGGTTTATGAAACCATATCTTCTTAATATTCACGTGCGTTATCACACTGGAGAAACGCCTTTCGAGTGcgatatttgtaaaaaaaaatttacgaaccGCAATTCTGTGAGAATGCATATAGCAACTCATATTGAAGGTGGTGGACCGCATAAGTGTTCAGTTTGTGGAAAAGGCTTTGTGAGAAAGTGTCGTTTAAAAGTCCACATGCAAATCCACTTAGGAGTTAAGTCCTACTTATGTAAAGTTTGCAAGAAAGCATTCACAAGAAAGGATTCTTTAACGGCACATATGGCTGTCCACGAAAGCGTAGAATCCTTTGGTTGTGAGATTTGcttcaaagagtttcctaaaatgtCAGCTCTCAAGACGCATAAGAGTATGATGCACTCGGATGATAAACCGATCGATTGTGAAAATTGTGGTAAAAGCTTTAGCAATAGAAGTAAGCTTACGCGTCATATGAGTTCTCATAATGGAGAGACTTCCGAGTGcgatatttgtaaaaaaatattcaaaagtcagcgtagtttaaaaactcataaaaaGATACATAAAGCTAAGGAAGATCTTCTGCAAGCAGGTTTTGAAACGGTTTATTTAGAAAGCGAGCATAATGAAGACAATGAGTCTCATCATATTTCTTTGAATGCAGTAGATGTAGTCAGTTCTGTGAAGACGGAAATTACGAGTGAAATAGAAGACAAAAGAGATAGTATTTTATCATAtgggaaaaataaatttgatgttACTTTTGATGGAGGTTTCGAAATAGATGTTGAAGATGTTAAGATAGAAGTTCATGAGGTGTaa
- Protein Sequence
- MDIKDEKCKFESNDLDYAFEGIIIKSEPPEYAPVDEANFEEDKKPQNLSSKVNDDTSIFKLPPEPKENNWCHLCQKGYKNRDSLKRHIRRHNAKQKGAGENTVRKYTVGKNTVGKKTVDSKIEGKLFCCNVCNNGFETEGELDMHIKEHSRYTPFECDYCRKKFTNRQSMKLHIIAHMAGGGPYKCEVCAKAFVRSYSLKIHLRFHSEDKPYECNICKQGFIRKNDHHAHMLIHENKKPFVCDICNKAFLRMSYLNNHKKIHLVDKPHACKVCGKRFIRIHDLTIHMRYHTGEKRFECDICKKNFKKYQTMKVHIYSHMGFDQRHKCPICPKEFSRSNYLKEHLQGHSGNRPYECEFCKKTFVKRYSLNSHVLIHQKTKDFICDICNKGFTKSYYLKSHKRVHGGQQIEKPFQCELSSPNVERSYEDAMFRTVYLNSHKSGKNGDPCVVEIVPITVRNIDLRNAVQTKEDSTMQVQEEASIEKATDSGNDLGNEVQKKEDSTMQVQEKKSREKATDSGNSSLIYVKTEPSDRIDPTFEIEVEDVKFSPNHKDDICTEVIIKAEPPEPDLVDIKENLIGDLSKLSNDNHKNDPPKNHANSSEAPETKLEKRHRCDQCRQEFKNPQSLSNHKRIHTKKKRKMSRKKDPVPDKCPVCAKEFTNPNSLKVHIFRHHSEGKAFECEVCKKCFPLKYDLDAHMYMHTTKKAFVCDICSKAFRRLSYLNNHKKTHLEKRPYACKICSKRFMKPYLLNIHVRYHTGETPFECDICKKKFTNRNSVRMHIATHIEGGGPHKCSVCGKGFVRKCRLKVHMQIHLGVKSYLCKVCKKAFTRKDSLTAHMAVHESVESFGCEICFKEFPKMSALKTHKSMMHSDDKPIDCENCGKSFSNRSKLTRHMSSHNGETSECDICKKIFKSQRSLKTHKKIHKAKEDLLQAGFETVYLESEHNEDNESHHISLNAVDVVSSVKTEITSEIEDKRDSILSYGKNKFDVTFDGGFEIDVEDVKIEVHEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00011363;
- 90% Identity
- -
- 80% Identity
- -