Atri014648.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- BRCA2
- Assembly
- GCA_952773225.1
- Location
- OX731550.1:18874980-18880381[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.68 3.6e+03 -1.7 0.0 2 52 26 75 25 81 0.71 2 6 0.00021 1.1 9.5 0.0 2 54 87 138 86 144 0.91 3 6 0.00014 0.72 10.1 0.0 2 54 148 199 147 205 0.90 4 6 0.55 2.9e+03 -1.4 0.0 2 54 209 261 208 266 0.70 5 6 0.0018 9.4 6.6 0.0 2 53 271 322 270 329 0.83 6 6 1.7e-05 0.088 13.1 0.0 2 54 333 384 332 391 0.91
Sequence Information
- Coding Sequence
- ATGGTAGAGAATACGAAGAATGTAATGTCATCGATTGGTTTCACAACTGCTGGTGGTAAATCAATTAATGTGTCGGAAAAGGCTTTATCACAAGCAACGCAGTTATTTGCAAATGATTTTGAGGACAGAGATAGACACCTTGCAGTTAAAAATGTACCACCAGAAGAATTGCTTTCCGAAGGAAGGGTAGAGAATACGAAGAATATAATGTCTTCGATTGGTTTCACAACTGCTGGTGGTAAATCAATTAATGTGTCGGAAAAGGCTTTATCACAAGCAACGCAGTTATTTGCAAATGATTTTGAGGACACAGATAGACACCTTGCAGTTAAAAATGTACTATCAGAAGTATTGCTTTCCAAAAGAAAGGTAGAGAATACAAAGAATGTAATGTCCTCGATTGGTTTCACAACAGCTGGTGGTAAATCAATTAATGTGTCGGAAAAGGCTTTATCACAAGCATCGACATTATTTGCAAATGATTTTGAGGACGCAGATAGAGACCTTCCAATTGAAAATGTACTACCAGAAGTATTGCTTTCCAAAAGAAGGGtacagaataaaaaaaatgtaatgtccTCGATTGGTTTCACAACTGCTGGTGGTAAATCAATTAATGTGTCGGAAAAGGCTTTATCACAAGCATCGACATTATTTGCAAATGATTTTGAGGACACAGATAGACACCTTGCAGTTAAAAATGAAGTACTAACAGAAGAATTGCTTTCCGAAGGAAGGGTAGAGAATACGAAGAATATAATGTCCTCGATTGGTTTCACAACTGCTAGTGGTAAATCAATTAATGTGTCAGAAAGGGCTTTATCACAAGCAACGACATTATTTGCAAATGATTTTGAGGACACAGATAGACAACTTGCAGTTAAAAATGAAGTACTAACAGAAGAATTGCTTTCCAAAAGAAGGGTAGAGAATACGGAGAATGTAATGTCCTCGATTGGTTTCACAACTGCTAGTGGTAATTCAATTAATGTGTCCGAAAAGGCTTTATCACACGCAACGCAGTTATTTGCAAATGATTTTGAGGACGCAGATAGAGACCTTCCAGTTGAAAATGTATTACCAGAAGTATTGCTTTCCAAAAGAAGGGTAGAGAATACGGAGAATGTAATGTCCTCGATTGGTTTCACAACTGCTAATGGTAATTCAATTAATGTGTCCGAAAAGGCTTTATCACAAGCAACGCAGTTATTTGCAAATGATTTTGAGGACACAGATAAATTCAATGAAATGGATATAACTGTTAGACAGATTGATAAACCTGAAATGCAAGTAGAAAACATTAGGTTCCAAACTGCGACCGGCCGAGGCGTTACAAAGGAGGCTTTATTAAAAGCAAAATCATTAGTCAGCAAAgtatcagaaaattttggaagcAGTCCTGCATTAACAAAGTCCGTGCAGAAACGTAAAATCAAGGATTTAGATGACGATGTACCATTAAAGAAACAAGTAACATCTAATCACTTTAAGAAGTTGCGATTTAGTAATGGGTTTGAAAGTCAAAGAAATACCAGCaaggatttaaaaaataatgcaaaCAATGAAAATCAAACAGCGCCTTCAACGACAACCGAGGTTTCAATTGCGAATAATACCGTGGATAAATCGATTGATAATATTTATAGAACTGAAAGAAGCAGACAGAATAATGATACAGATAATTCcttaatttcaaatgaaattgtaGCAAGTACAGTGGCACTTTTAGCCGACGAAAATAGTTCAGGCATTGTCGATCACTGGCCTTCTCCTGTACAGAGTATAGAAACCAACGATGGTGCAAATGTACCATCCAGTCCTGTAATAGGAGGGCACTTTATTCCTAGAAAACAAAAGAGTGGTCGAAAGAAAAGTATAAATGCTTTACAAACTACAGAACACAAATCTGTCTGTAAACATGATTTAAAAAGATTGAATCTTAATTATGAAAGTTCAGATCAGTCTACAGGAAAGAAACATAAAAGTTTAACAGAAGAGCCAGAGCGTGTGGATACAGAAAAGAAATATGATACTTTGGTTACCACTGAATTTGGTGATAGTCAATTATTGATGGATTTTATTAATGAATCTGCTAATATATTAGAGAAGCGTTTAGAAGCTGCTTTGGAACAAGATAAACAAATTACTTTGAAAAAGAAATCTAAACCAAATCCAACAATCAGTAAACTATATTTTCACAGAAAGAGCAATCGTAATAATCGTGTATCTTGGAAAGAAATCAGTAAAGGAAATGTGCCTGTTCCATGTACATATAAAGAGCTTATCCAGCGAAAGTTACCACCTGAAATTTTGGACGTAACTGCTAATAATGCTATAACGTATAAATTTCGATGTGCAGATTTTTATGGACAAGACATTGTACAAGATAATATTGAGGGTATAAAATTAGAAGATGGAGGATGTCTGATTCTGGATGAAAATAGCTACGTGGGAATATCAGAAATTAAGCGGTCCTTCTTAGCGAGTCCAGGAGTGGATCCCGATTTGCTTTCTGCTGGGTGGGtggaaaatcattacaaatggaTTGTATGGAAGTTGGCATCAGTGGATAGAATAAAATTTGGATCTGAAATTTTATCGAGAGCATTGACTCCTGATAGAGTAATGAGGGAATTGAAATATCGTTACGATCGGGAAATTGATAGATCTGAGAGACCAgcattaagaaaaattttgGAGAAAGACGATGTTGCGTCTAAGAGAATGGTTTTATGTGTATCATCTATTATTGagTGCGATGATTCTGCTTCTACAAGCAAAAGTCCAAATCAATTGAAAATGCCATCAAAGCGACTAATATTAACAGATGGATGGTACAGTGTTCAGGCCTCTATTGATCAAGCAatgattaaaaatataatatccgGTAAATTAAAGGAGGGAACGAAACTAATGACATATGGGTCTGAATTGTTAAATTGTGACCAAGGATGCTCACCATTGGAAGTTCCGGAGAATGTATGCTTAAGAATACACACAAATTCTACGAGAAGAGCAAGGTGGGATACAAAATTAGGATATGTAGTACCTTTAGGACCGATGTGTATAAAATTAAGGGACATTTGTTCGACTGGCGGTTTAATTGGGAAAATTAAAGTGTTGGTTGCACGTGTCTATCCAGTTTTGTATCACGAGAAAACTGTAGCGGGGGAGTCTATCGTTCGTAATGCGAGGTGCGAAGAGAAAGCTGACATCGCTTATAAGAAAGAACGTCAATCAAAAATAGAAGCATTCTATGCGGAATCCGAGGCGTATTTCTCCGAAGACGGGAGAAAAAACAATACGAAGCCAGATAGCTTCGATTTAGCAGCAATTGAGTGGAATGAACATCGTGAAAAGTTGTCTAATAagAAATTTCATTCGAAACAAGAACAGCAGCAATTAATAAACAAATGTCGTATGGAAGAAGAACAGCTTAGGAAAAAATTAGAATCTCGATTACAGGCAAGTTTACCAAAGCCTCGGAATGTCACGCCCCTTTTAAAAGTTCGAGTAATCGAAGAAAATACAAGTGTCATTCTTTCTCATTGGTCTCCTAGCGAAGAAGTTACGGATCTTTTCAAAGAAGGAAATTACATATCAATTTGTAATCTTACGCCCTCGTGTAGAAGAGGTAGTGAGCTGCAATTAACTGCAGGTCGAAGCGCAGTATTTAATCAAATCAATAATTCTAACATAATTTATCCGCGAAGATCATTTACACCGCTATGTGATGTAAACAAACCTACTTTTACTCCACCATATGGAGAATTTGATACAGTGGGAATTGTCGTCTCTATTGCGAATGAACCATACGGTATGAAAAATTTTCAAGCTGCGTATTTGGCATATCCCAATGCAAATTCTCAGTCTTCGTATTTGTCGGTGCTATTTTGGCAAGGAATATCTTCCCATGGGTATGCAGAAATTTTGACCGCGGGATCTTCGGTTGCTTGTAGCAATTTAGAATGGCGACGAGCCACATCGTGGAATATACAAATGTCATATTGCACAGAGAGAAGTGCTTTCACGCGAAATCCTCGTCAGAATCATCTTCAACAGCCATTCAACGATTTGAAACGTTTAATCACAGACACCGCCGAGTACGTAGCTATGTGCGGGGCAGAAATTTCTGAGGAAGCGCAAAAGAAGTCTACGACGAGAATGTCAGACCAATACACGCCAAATAAGATTCCGTCTAACGATAGCTTTCACTCAGATAAACAAATTGGTAATTGTCCGGTTCAAGAATTTTCAGGGAGAAGTTCAACGACAGCAAGGTCCGTTGCGATACAGAAACGGCTTGAAAAGCTACACTACTATGGGGAACCATCGGGCTTGTCCCCGATTGTGCTGAATAACAGTTCCAAGAGAGTGTCGTTAGATTTTCAGTCTCCCGTTCGCAAAGTGGATGCGAAACAATCGAAAGTTCATGTATCattaaattcaaaattttcacaGAATCCCACATGA
- Protein Sequence
- MVENTKNVMSSIGFTTAGGKSINVSEKALSQATQLFANDFEDRDRHLAVKNVPPEELLSEGRVENTKNIMSSIGFTTAGGKSINVSEKALSQATQLFANDFEDTDRHLAVKNVLSEVLLSKRKVENTKNVMSSIGFTTAGGKSINVSEKALSQASTLFANDFEDADRDLPIENVLPEVLLSKRRVQNKKNVMSSIGFTTAGGKSINVSEKALSQASTLFANDFEDTDRHLAVKNEVLTEELLSEGRVENTKNIMSSIGFTTASGKSINVSERALSQATTLFANDFEDTDRQLAVKNEVLTEELLSKRRVENTENVMSSIGFTTASGNSINVSEKALSHATQLFANDFEDADRDLPVENVLPEVLLSKRRVENTENVMSSIGFTTANGNSINVSEKALSQATQLFANDFEDTDKFNEMDITVRQIDKPEMQVENIRFQTATGRGVTKEALLKAKSLVSKVSENFGSSPALTKSVQKRKIKDLDDDVPLKKQVTSNHFKKLRFSNGFESQRNTSKDLKNNANNENQTAPSTTTEVSIANNTVDKSIDNIYRTERSRQNNDTDNSLISNEIVASTVALLADENSSGIVDHWPSPVQSIETNDGANVPSSPVIGGHFIPRKQKSGRKKSINALQTTEHKSVCKHDLKRLNLNYESSDQSTGKKHKSLTEEPERVDTEKKYDTLVTTEFGDSQLLMDFINESANILEKRLEAALEQDKQITLKKKSKPNPTISKLYFHRKSNRNNRVSWKEISKGNVPVPCTYKELIQRKLPPEILDVTANNAITYKFRCADFYGQDIVQDNIEGIKLEDGGCLILDENSYVGISEIKRSFLASPGVDPDLLSAGWVENHYKWIVWKLASVDRIKFGSEILSRALTPDRVMRELKYRYDREIDRSERPALRKILEKDDVASKRMVLCVSSIIECDDSASTSKSPNQLKMPSKRLILTDGWYSVQASIDQAMIKNIISGKLKEGTKLMTYGSELLNCDQGCSPLEVPENVCLRIHTNSTRRARWDTKLGYVVPLGPMCIKLRDICSTGGLIGKIKVLVARVYPVLYHEKTVAGESIVRNARCEEKADIAYKKERQSKIEAFYAESEAYFSEDGRKNNTKPDSFDLAAIEWNEHREKLSNKKFHSKQEQQQLINKCRMEEEQLRKKLESRLQASLPKPRNVTPLLKVRVIEENTSVILSHWSPSEEVTDLFKEGNYISICNLTPSCRRGSELQLTAGRSAVFNQINNSNIIYPRRSFTPLCDVNKPTFTPPYGEFDTVGIVVSIANEPYGMKNFQAAYLAYPNANSQSSYLSVLFWQGISSHGYAEILTAGSSVACSNLEWRRATSWNIQMSYCTERSAFTRNPRQNHLQQPFNDLKRLITDTAEYVAMCGAEISEEAQKKSTTRMSDQYTPNKIPSNDSFHSDKQIGNCPVQEFSGRSSTTARSVAIQKRLEKLHYYGEPSGLSPIVLNNSSKRVSLDFQSPVRKVDAKQSKVHVSLNSKFSQNPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -