Basic Information

Insect: Andrena praecox
Gene Symbol: ush
Assembly: GCA_963932275.1
Location: OZ010728.1:66899004-66904137[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0063 0.91 11.1 0.0 3 20 275 292 273 294 0.92

2 8 4.6e-05 0.0067 17.9 1.3 1 23 324 346 324 346 0.98

3 8 0.088 13 7.5 1.9 3 20 385 402 384 404 0.93

4 8 0.016 2.3 9.9 4.4 2 21 620 639 619 640 0.94

5 8 0.074 11 7.8 0.0 3 20 668 685 666 687 0.91

6 8 0.018 2.6 9.7 0.0 2 23 726 747 725 747 0.95

7 8 0.023 3.4 9.4 1.5 1 23 753 775 753 775 0.98

8 8 0.1 15 7.3 0.5 3 21 868 886 867 887 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0063	0.91	11.1	0.0	3	20	275	292	273	294	0.92
2	8	4.6e-05	0.0067	17.9	1.3	1	23	324	346	324	346	0.98
3	8	0.088	13	7.5	1.9	3	20	385	402	384	404	0.93
4	8	0.016	2.3	9.9	4.4	2	21	620	639	619	640	0.94
5	8	0.074	11	7.8	0.0	3	20	668	685	666	687	0.91
6	8	0.018	2.6	9.7	0.0	2	23	726	747	725	747	0.95
7	8	0.023	3.4	9.4	1.5	1	23	753	775	753	775	0.98
8	8	0.1	15	7.3	0.5	3	21	868	886	867	887	0.92

Sequence Information

Coding Sequence: ATGTTCAGCTATTTTGATCAGCCTTATCACACCAAAGCTCACGTCTATATCCAAGGCGGAGGTGCACCCCCTCCGGTCCCAGGGGAGGATGAGGAATGGAGCGACTCGGAGAAGACACCATCGGTGAGCAGTGGCGTGGAGGGTGGTGGTTCGGCGGTTTCCAGCCCGATCGCGCCGGTCGTCGAAGAGGAATCGAGCCTGCCGCCACCACCGAGACTGAATCCCCCGTCCTCGTCGGTTGCCATCGTGAATTCGGCCGCCGAGGATATCAGATTGAGGCTCAGCGTCCTCTCCGAAGACGCTCGGAAACGGCTGGCTAGTCTTACCGAAGATATCGAGGTTGCTAGAAACTTGAGAGACCGACATGTTAGCTCGAAGCCGAATCAGACGCGAGAGTCGAGTCCCAAAGATACGGACGAGGAAGCCAGCATGGTCGTGGTCAAGGAGGAGGACTGTCAGCCGAGGTCCTCGTCTTCGTCCACCTCCTCGACCCGAAGGCGGGAGTCCGTCTGCAGGAGAGACTCTGAGGACTCGTCGAGGCGGTCCAACGCGGATGAACCGCCCTCAGAGAAGAAGCTGAAGCTCGACGACGAAGCAGCACCAAGACTGAGACTTAATACTAGTCTGGCGACGGATCCTGCTCTTCGACCCGCCGCCGTGGCAGCGCTCACCGTCAAACCGGAGAATACCTCGCCGCCAAACTCTGTGCCACCTCTGCCAGCTGGACTTCAAAATGCAATAGCGTCAGGTCGGTTGTTCGTGCTGCCAACAGACGGCAAGGAGACAATCACCGTGGAGCCAGCCAGGCCAATTCCTCTGATCTGCCCACCCTGCGGTATCCGCTTCAGCTCGGCGAGCACCCTGGAGGCGCATCGCACATTCTACTGTGCCCATCGTCCGCGGCTCGAGGAGGACACCACGAACGACGAAGACGAGGAGAAGTCCAGCAAGTTCGAAGTGAGAAAGGCGTACGCCTGCCCCCACTGTTCGTACAGCGCGGACAAGAAGGTCTCGCTGAACAGACACATGAGGATGCACGCCGCTTCTCCAGCACCGCCGACGATACCGGCGGCACCCACCGCTGCGACCATTCCAGCAAGTGGCGCAGCGACCGCCTCCAACGGCTCGTTGAACGAAGAGGCGGAGAGATACTGCAGGAACTGCGACATCAGATTCAGCTCCCTCAAGACTTTCAGAGCGCACAAGACTCACTACTGCAGCACCAGGCACGTGGTCAAGGACACACCGCCAGCGGCTAGCACGGCTTCCTCGTCGGTGAAAGCGTCACCACCGACGAGTGTCAGTCCCGGAGATTCCCCACCGCCGCAGCCCTGTCTGGCACTGCCTACGAACCCGATCCTGATCGTGCCGTACTCTCTGTTCCGCGGGGCCAGCGTGTTGGCTGCGCCGACTCTGCCTGCGCCTGACACTGCGTGCTTCCTTCTTCCGAACGGTCATCTTCAACCGATGACCAGGGGTCTTGCCACCACTGCGCAGAATACCGTAGTTGAACCTCCACCGGTCCTTCGGGCAGCGAACAAGCCGACAACGCCCGCGTCAGTCGTGGCATCGTCCGCGTCACCGCCAGGCTCGGCGCCCCTTGATCTGAGCGTCCGAAAGTCTCCAGCGCACCAGGATGAAAAGGAGAACAGGGTGTCGCCCGCGCCATCCTCTCTGCCCCCGCCGCCTGGTAGCCCGCGATCCAGAGGAAGCGGCAGTCCCAGAGCGAGATCTATCAGCTCTGCTCCAACGACGACTGGAACTGTTGCGCCACCTCCGCCGACGGAACTCGCTCTGAGACTGGCTGAACTGCCACCGCCGCCCGTTCCTGGTGTCCTCGTCAAGCAGGGTGTCTCGAGATGCAAAGAATGCAACATCGTATTCTGCCGCCACGAGAACTTTGTCGCGCACAAGAAACACTATTGCCAAGCGAGGGAAACCACGGTGAGTAACAGTCCACCGCCACCAGGCACACCCTCGCCTCCTCTGGTCCAGCTGATCTGCGCCGCGTGCGGCATCAAGTTCGCCTCCATGGACAATCTTGTGGCCCATCAGGCGTTTTACTGTCCCAAAAGGCCGGAACCTCAGGAGCATCACTCGAGATGCCCCAAATGCAAGGCTATAATCGAGGCTGGTGGCACTCACACGTGTACCAGTGGACCGACTGGAGGCTGGAGGTGTCCTGTGTGCGGTGCTGTTAGCCCAACAGCAGGAGCTGCGCAGCGCCACATGGACGCGCATCAGGGTGTGAAGGCCTTCAGGTGCACGATCTGCCGTTACAAGGGGAACACGTTGCGCGGTATGAGGACCCACATCAAGATGCACTTCGAGAAACGCGGGGCCGACCTACAGGAGGAAAACTACATAACGTGCGTGCTAGACGACGAAACGGTCCTACCGACGCCAGAACCCGCCCCAGCCACCACCCCCGAGGAAATCCCTAACGAAGTGCAGGTGAACGGTAAGACCGAGGTTCGAAAGAGCCCACAGCCACCCCCGCCGCCCCCGCCTCCGACGGTGACGAGCAAGGTGAAGCAGGAACGCGAAGACACCCCGCCGCCGGAGGAGAGCCTGGACCCGAACAAAAGCGGCCCGCGTTACTGTCGGTCGTGCGACATCAGCTTCAACTATCTGAGCACCTTCATAGCTCACAAGAAGTTCTACTGCTCGAGCCACGCCGGCGAGgcgagcaacaacaacaacaacaataataataataataattcgagCAGCCACGCTACGACGCCTCCAAGTGGCAGGACCGAGGCGTCGGTACTCTAA
Protein Sequence: MFSYFDQPYHTKAHVYIQGGGAPPPVPGEDEEWSDSEKTPSVSSGVEGGGSAVSSPIAPVVEEESSLPPPPRLNPPSSSVAIVNSAAEDIRLRLSVLSEDARKRLASLTEDIEVARNLRDRHVSSKPNQTRESSPKDTDEEASMVVVKEEDCQPRSSSSSTSSTRRRESVCRRDSEDSSRRSNADEPPSEKKLKLDDEAAPRLRLNTSLATDPALRPAAVAALTVKPENTSPPNSVPPLPAGLQNAIASGRLFVLPTDGKETITVEPARPIPLICPPCGIRFSSASTLEAHRTFYCAHRPRLEEDTTNDEDEEKSSKFEVRKAYACPHCSYSADKKVSLNRHMRMHAASPAPPTIPAAPTAATIPASGAATASNGSLNEEAERYCRNCDIRFSSLKTFRAHKTHYCSTRHVVKDTPPAASTASSSVKASPPTSVSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPTLPAPDTACFLLPNGHLQPMTRGLATTAQNTVVEPPPVLRAANKPTTPASVVASSASPPGSAPLDLSVRKSPAHQDEKENRVSPAPSSLPPPPGSPRSRGSGSPRARSISSAPTTTGTVAPPPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARETTVSNSPPPPGTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKRPEPQEHHSRCPKCKAIIEAGGTHTCTSGPTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIKMHFEKRGADLQEENYITCVLDDETVLPTPEPAPATTPEEIPNEVQVNGKTEVRKSPQPPPPPPPPTVTSKVKQEREDTPPPEESLDPNKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNNSSSHATTPPSGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01255959;
90% Identity: iTF_00964084;
80% Identity: -