Amar006579.1
Basic Information
- Insect
- Andrena marginata
- Gene Symbol
- Hr39
- Assembly
- GCA_963932335.1
- Location
- OZ010660.1:41831122-41835161[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2 2.2e+04 -5.7 8.9 131 166 35 70 22 99 0.51 2 4 0.4 4.4e+03 -3.0 7.6 59 143 268 367 227 400 0.48 3 4 2.4e-08 0.00026 20.8 0.0 1 23 467 489 467 495 0.92 4 4 7.4e-71 8.1e-67 226.7 0.1 185 408 622 841 499 841 0.90
Sequence Information
- Coding Sequence
- ATGTCAGAGCAAAACGGGCCCAGCGAGGGCCCAGGACCTGGTCCAGGGCCAGGTCCGGGCTGGTGGCCAGCCTCCTCGCAATCTTGGAAGGCAAACTCTGCTACATCCAGCTCGTCATCCACTAGCTCCACCGCTCCAGATAGCTCCGCCTCCGTCTCTGCATCCTGCACCACCTCTACCTCCTCCCTGGCAACTACCACTTCGGCTACATCTTCATCCACCTGCTGTTCGTCGTCACCTGGTGGACACTCGTGCACGATCACCGCCACTCGTTCCACGGAAACAGGGAAGAATGTCTCTGTCACCACGATCAACGTGCCACCTAATCAGGACATACGCGATGGCAAGGGTATCTGCAAATATCTTGCCGGACAGAACGGCGTGACGGTATCCGTAGTATCGAGTTGCGGTTCCGTCCTGGGTTGCGGAAACACAAACGTTCCGTCCGCGACAGGAATCGGCACTAATAGCGGCTCGCACAGTATTGGTATCGGGATTGGGATTGGTGTTCTGGGCCAGAACACCGCAGACAACGACGCAGAGGATAGCGATGGGGAGATAAGCAAGATTGACTTTCGCGGGGTGAATCTACGTACGAAGAAGAAGCGTGACGTACTGGGAAGTGGGGAGAAAATTGGCGACGGGGATGTCGAAGACGGGAATGGTTGCTACGACGGGAACGATATTTCCCAGCAGCAACCAGAGAGACCTATGTCGTGGGAGGGAGAGCTGTCTGATCAAGAAATGTCTTCCAACACGATCACTAACCAAGATACGCACGAGGAGACGTCGATGGAAGGTGTCCAGGTGTGCAGTGCGAGTCCGGGCCCTATGGAGCAGAACTTCAACAACTCGACCTcctcgttgtcgttgtcgttgtcacACTCGCTGTCGAGGAATAACTCGGACGCATCGAGTAGCTGCTACAGCTACGGCTCTCTCAGTCCACCCACCCACTCACCCGTCCAACAGCCAAGGCATCCGCAGCATCATCAGCATCAGGTAGCCCAGGGAAGTCCTCTTCATCTACCAGCAACCGGCTCGTCCGCCGTTGCGCATCATTATTCGTCCTCAGCCCCGGGCTCTGAACTCTCTCCGGAAGCGCACGCTGTCAATGATGACCAAGAAGACTGTCGAATACCCTCCGCACCATCTGGTATCTCCACCAGACAGCAACTGATCAACAGTCCCTGTCCGATATGCGGGGACAAGATCAGCGGCTTCCATTACGGGATATTCTCGTGCGAGTCTTGCAAGGGATTCTTCAAACGCACCGTCCAGAATCGAAAGAACTATGTGTGCCTTAGAGGTGCGGGCTGCCCGGTCACCGTTGCCACCCGAAAGAAGTGTCCAGCCTGTCGCTTCGATAAGTGCCTCAATATGGGTATGAAACTAGAGGCAATCAGAGAAGATCGTACCAGAGGCGGAAGAAGCACTTACCAGTGTACCTATACGCTTCCAGCGAGCCTGGTTGGTAGTCCCGCAGGTGGTATGTCCAGCGACAAACTGGCAACAGGAGGAAACTGCAGTCCAGCTCCGCCTGGCAGTGAGCACCACTACTCCGCCAGGCATCACTCGAATCACTCGCACAAGATACAAGTGGTGCCTCAACTTCTGCAGGATATCATGGATGTGGAGCATTTGTGGCACTATAACGACAACGATCGCATGTCTGGGATCCAGTCCGGGGGAACTACCGCTGCTAGGAGCAACGATGCAATGTTGCTGGGAGTTGGCTCTGGCGCAGGAAATGATGCCGGGTCAGGAATCGAGTGCTCTTCGAATGGGACCGCAGGAAATGGAAATCTTAGTAACAGGAGAGACGGCAGGTCTTGCTCTGCCGTTTCTGGTGTCAGCAACGAGCAACGTACCGCGCCCCTCAACAGCAATTCACAAATTGGTAGCAATGCGAATGGTAACTCCACTCAGCATCCCGATTTCCTCTCGAACCTCTGTAACATAGCAGATCATCGGCTCTACAAGATAGTGAAGTGGTGCAAGAGTCTGCCGCTGTTTAAGAACATTTCGATCGACGATCAAATTTGTCTGTTGATTAATTCCTGGTGCGAGCTGTTGCTCTTCTCGTGCTGCTTTCGCAGCATGAGCACTCCTGGTGAAATCAGAGTGTCTCTCGGCAAGTCGATCACCCTGGAGCAAGCTAGACAGCTTGGCTTGGCGACCTGCATCGAGAGGATGCTCGCATTCACTAACAATCTGAGAAGGCTCAGAGTCGACCAGTACGAATACGTAGCAATGAAGGTGATAGTACTGTTGACCTCCGATACGAGTGAATTGAAGGAACCTGAGAAAGTTAGAGCCTCGCAGGAGAAGGCCCTGCAAGCGTTGCAGCAGTACACCATAGCAAGGTATCCAGAGATGCCTGCCAAGTTTGGTGAACTGTTGCTGAGAATTCCAGACTTGCAAAGAACATGCCAGGCAGGGAAAGAATTATTAAGTGCGAAACGTGCTGAAGGTGAAGGCAGCTCGTTTAATTTGTTGATGGAATTACTTAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGPGWWPASSQSWKANSATSSSSSTSSTAPDSSASVSASCTTSTSSLATTTSATSSSTCCSSSPGGHSCTITATRSTETGKNVSVTTINVPPNQDIRDGKGICKYLAGQNGVTVSVVSSCGSVLGCGNTNVPSATGIGTNSGSHSIGIGIGIGVLGQNTADNDAEDSDGEISKIDFRGVNLRTKKKRDVLGSGEKIGDGDVEDGNGCYDGNDISQQQPERPMSWEGELSDQEMSSNTITNQDTHEETSMEGVQVCSASPGPMEQNFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATGSSAVAHHYSSSAPGSELSPEAHAVNDDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVGSPAGGMSSDKLATGGNCSPAPPGSEHHYSARHHSNHSHKIQVVPQLLQDIMDVEHLWHYNDNDRMSGIQSGGTTAARSNDAMLLGVGSGAGNDAGSGIECSSNGTAGNGNLSNRRDGRSCSAVSGVSNEQRTAPLNSNSQIGSNANGNSTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087258;
- 90% Identity
- iTF_00087258;
- 80% Identity
- iTF_00087258;