Basic Information

Insect: Andrena bicolor
Gene Symbol: -
Assembly: GCA_960531205.1
Location: OY482665.1:50983589-50988570[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 1e-05 0.00088 19.9 0.9 2 23 66 87 66 87 0.97

2 28 0.00077 0.065 14.0 1.5 1 23 89 112 89 112 0.93

3 28 0.00066 0.055 14.2 0.5 1 23 117 140 117 140 0.97

4 28 0.00018 0.015 16.0 2.0 1 23 146 169 146 169 0.96

5 28 0.069 5.8 7.9 0.4 3 23 177 198 175 198 0.95

6 28 0.0023 0.19 12.5 0.9 1 23 203 225 203 225 0.96

7 28 5.1e-07 4.2e-05 24.0 0.1 2 23 232 253 231 253 0.97

8 28 1.1e-06 9e-05 23.0 0.2 1 23 259 281 259 281 0.98

9 28 0.0017 0.14 12.9 0.4 1 23 287 309 287 309 0.97

10 28 0.19 16 6.5 7.6 1 23 396 419 396 419 0.96

11 28 1.4e-06 0.00012 22.6 0.4 1 23 425 447 425 447 0.98

12 28 2.8e-05 0.0024 18.5 1.5 1 23 453 475 453 475 0.98

13 28 0.00013 0.011 16.4 0.1 1 23 481 503 481 503 0.98

14 28 1.2e-05 0.001 19.7 5.3 1 23 509 532 509 532 0.98

15 28 0.00091 0.076 13.8 0.5 1 23 548 571 548 571 0.97

16 28 0.029 2.4 9.0 0.7 3 23 581 601 579 601 0.95

17 28 7.8e-06 0.00066 20.3 0.4 2 23 608 629 607 629 0.98

18 28 0.00032 0.027 15.2 0.2 3 21 637 655 635 656 0.95

19 28 0.31 26 5.8 0.5 3 23 692 713 691 713 0.96

20 28 6.6e-06 0.00055 20.5 1.0 1 23 719 742 719 742 0.98

21 28 0.075 6.3 7.8 0.7 2 23 748 769 747 770 0.94

22 28 2.2e-05 0.0018 18.9 0.5 1 23 775 797 775 797 0.98

23 28 0.017 1.4 9.8 0.5 2 23 804 826 803 826 0.94

24 28 0.00011 0.0095 16.6 2.5 1 23 847 870 847 870 0.93

25 28 0.0042 0.35 11.7 0.1 1 23 881 903 881 903 0.95

26 28 0.016 1.3 9.9 3.6 1 23 909 931 909 931 0.94

27 28 9.9e-07 8.3e-05 23.1 1.1 1 23 937 959 937 959 0.98

28 28 3.4e-05 0.0029 18.3 0.1 1 21 965 985 965 986 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	1e-05	0.00088	19.9	0.9	2	23	66	87	66	87	0.97
2	28	0.00077	0.065	14.0	1.5	1	23	89	112	89	112	0.93
3	28	0.00066	0.055	14.2	0.5	1	23	117	140	117	140	0.97
4	28	0.00018	0.015	16.0	2.0	1	23	146	169	146	169	0.96
5	28	0.069	5.8	7.9	0.4	3	23	177	198	175	198	0.95
6	28	0.0023	0.19	12.5	0.9	1	23	203	225	203	225	0.96
7	28	5.1e-07	4.2e-05	24.0	0.1	2	23	232	253	231	253	0.97
8	28	1.1e-06	9e-05	23.0	0.2	1	23	259	281	259	281	0.98
9	28	0.0017	0.14	12.9	0.4	1	23	287	309	287	309	0.97
10	28	0.19	16	6.5	7.6	1	23	396	419	396	419	0.96
11	28	1.4e-06	0.00012	22.6	0.4	1	23	425	447	425	447	0.98
12	28	2.8e-05	0.0024	18.5	1.5	1	23	453	475	453	475	0.98
13	28	0.00013	0.011	16.4	0.1	1	23	481	503	481	503	0.98
14	28	1.2e-05	0.001	19.7	5.3	1	23	509	532	509	532	0.98
15	28	0.00091	0.076	13.8	0.5	1	23	548	571	548	571	0.97
16	28	0.029	2.4	9.0	0.7	3	23	581	601	579	601	0.95
17	28	7.8e-06	0.00066	20.3	0.4	2	23	608	629	607	629	0.98
18	28	0.00032	0.027	15.2	0.2	3	21	637	655	635	656	0.95
19	28	0.31	26	5.8	0.5	3	23	692	713	691	713	0.96
20	28	6.6e-06	0.00055	20.5	1.0	1	23	719	742	719	742	0.98
21	28	0.075	6.3	7.8	0.7	2	23	748	769	747	770	0.94
22	28	2.2e-05	0.0018	18.9	0.5	1	23	775	797	775	797	0.98
23	28	0.017	1.4	9.8	0.5	2	23	804	826	803	826	0.94
24	28	0.00011	0.0095	16.6	2.5	1	23	847	870	847	870	0.93
25	28	0.0042	0.35	11.7	0.1	1	23	881	903	881	903	0.95
26	28	0.016	1.3	9.9	3.6	1	23	909	931	909	931	0.94
27	28	9.9e-07	8.3e-05	23.1	1.1	1	23	937	959	937	959	0.98
28	28	3.4e-05	0.0029	18.3	0.1	1	21	965	985	965	986	0.96

Sequence Information

Coding Sequence: ATGATAATCTGTTTTAGTTCCTCACCGTTGGATCCCCTGCGCGACACGACCGCCTCCGAAGAGCCATGGAAGATCAGAATACCTCCCTACAGCCCGGCGAAGGAGAGGAGATTGCCAAAAAGCCGAGTGAAAGGTCCACCGACGAGAAAGAATGAGAAAGACGCGAAACCAAAGAACAAGATCGACCGCCGCCCGGAGTGCGACTATTGCGGCAAAAAGTTCTATGGGAAGTCGTTTCTAGTATCGCACATGAGACAGCACAAACACCCCTGCGAGACCTGCGGGCAGACCTTCAAGCTGAGAAAAGACTTGAAGCTCCACTACGAGCAGGTCCACGGGCCGCTGCTTTACCCCTGCGACATCTGCGAGTACAAGAGCAAGAACAAGTGGACGTTGAAGGATCACATCATCAGGAGGCACACCGGCAGCTACGTGTACACCTGCAAGATCTGCGAGAAACAGTTCAAGATCAAGAACGACCTGAGGCAGCACACCAACCAGATGCACAACAATCAGCCGCCCATTATCTGCACCGTCTGCGGCCATCCGAACAAGAGCCTTCCGGCGTTGAAGTCGCACATGAGGTACAGGCACTTCAGGCCGGAGCACGAGTGCAGCATATGCAAGCGTAGATTGATGACGCAGGAGAGCCTCGAGCAGCACTTGCTCTGGCACGAGAGGCAGGAGAAGGTGGTCTGTCCCACCTGCGGCAAGATCTTCAGTCAGAGGAGAGACCTGAACCTCCACATCAGGATCCACGAAGGTATCAAGCCATTCACCTGTCCCATCTGTGGCAAATCATTCTCGAGGAGGACTGCCCAAGAACAGCACATACTGATACACACTGGCATGAGGCCTTACGCCTGCGATATCTGCGGGCAAGCTTTCGCTCAGAAACCTGGACTGATTTGCCATAGGAAGCGACACCCTGGACCTCTGCCACCGCTGCCCGTCATCTCCATTAAGAAGCTGATCAACGAATTCACCGAGGGCTTGGCGGACGCGTCCATGGAAAAGGACGAGTCTGCCAGCGAGTCGGGGGAGAAGGATGAATCTGTGCAGGCATCGAAGGAAAGGGATGAGTCTGTGCAGGGATCCAAGGAGAAGGACGAAGCTGTCCAAGCTTCCAAAGAGGACGAAGTGAAGGAAGAACTCGAGTCGCGAAGGGCGAACTCGCGAGCGGTGCACGAGTGCGTGAAATGCGGGGCCTGCTTCTGTCACACGAGGAAGCTGGTGGAGCACCTGAAGAATCTGCACGACATCGACAGAGCGTTCAGCTGCGACGAGTGCGGCAAGACCTTTCGAAGCCCCATGAACATAGCCCGCCACAAACGCATTCACACGGACTTGAAGAAGTTCTCCTGCGACCTGTGCGACTATCGGTCCAACCAGAAGTCGAACCTCGAGATCCATCGCCGACGGCACACCAAGGACTACGCGTTCAGGTGCGAGGAATGCCAGAAAGGCTTCGTCTCGAGGGCGGAGTACCTGGTGCACGTGAACATCCACACGAGGAAGCATATCTATCGGTGCGAGCACTGCGACAAGTCCTACCCTTACAAGAAGAACCTCACCACCCACCGGAAACGCCAGCACCCGAGCACTCTGCCCGCGGACCAGGCGAGGAACGTGAAGCTCAAGTACTCGTGCCAGGTGTGCCTGGAAGGTTTCGCGCAGAAGCTGCTCCTGAATAGGCACCTGAAGAAGCAGCACGGGCTTCACGACAAGGTGAAGCACCTGTGCGACCTGTGCGGCGCGGTGTTGTCTTCTAAGCGGCGATTGATGGAGCACAGGCGGGGCCACGTGTACGAGAAGACCGTCAAGTGCGAGTTGTGCGACAAGATGTTCGCCAGCAAAGAGTACCTCAGCGTTCATCGGCGCATACACACGGGCGAAAAGCCGTACGGTTGCTCGCAGTGCGACAGGAGGTTCACGCAGAGGACTGCTTTGATCCTGCACATTCGCCAGTGGGACAATGGTCACGAGGGGCTTGCCAGCTGCGACGATTTCAAGATCAAGAGCGAGGATATTCTTCTACAGGCTGGGCAGAAATTTGAGGGTAACGAGAAGGCCTGCGACCTCTGCCAAGAAAAGTTCCACTTCGTTACCAGATTAGTGGCACATTTGAGGATCGTTCATGGTATTCACAGACCCTTCAAGTGTGACACCTGCGGCAAGACGTATCCGCAGCAGTTTATGCTGAACGCCCACGTGAAGAAGTCCCACACGCCGAAGACGATCCCTTGCAACCAGTGCAACTTCATGGGGGTGAATGCTACCGATGTGGAGAGGCATACCAAGCGACACCATCGCGAGGAGAAGTTCACATGTGAGATCTGCAGCGAGAGCTTTGAGGACAAAGACTCGCTGATGACGCACACTACAATGCACAACTTCATGCAGTATCAACAGTGCAACGCCTGCGGCAGCACCTTCAACGATGTGTACAGCTTGAAGGAGCACAATCGCTTGTATCACTACGACCCCGCGGCAATGATGCAAGAGAAGCTCGAGGAAGGGGACCAGCAGTCTTCGGAGCACAAGTGCAACGTTTGTGGCAAAGTTTACAAGTACAAGTCCGTGTTGAAGCAGCACAAAGTGAAGGCCCACGGCGACACCCCCAACTACGAGAGGCGCAGATACCTGTGCGCCCTTTGCGGCAAGGAGCTGAAGACAGCAAAGGGGTTGGAGATCCACAATCGTTCCCACACTGGCGAGAAACCGTACACCTGCGAGGTCTGCGGCAAGTGTTTCGCCTGCGAGACCCTGCTCAGGACTCACAACGTCACTCACACTGGAGAACGAAAGTATTCGTGCGACCAGTGCGGCAAAGCCTTCACCCAGAGGTCCACCCTGGTGGTGCACAAACGGTATCACACGGGTGAAAGGCCGTACGTATGTCCCCGTTGCGGAAAGGGCTTCGTAACGAGGACCGTTTTGAACACCCACATGAAATCCTGTCGCTGA
Protein Sequence: MIICFSSSPLDPLRDTTASEEPWKIRIPPYSPAKERRLPKSRVKGPPTRKNEKDAKPKNKIDRRPECDYCGKKFYGKSFLVSHMRQHKHPCETCGQTFKLRKDLKLHYEQVHGPLLYPCDICEYKSKNKWTLKDHIIRRHTGSYVYTCKICEKQFKIKNDLRQHTNQMHNNQPPIICTVCGHPNKSLPALKSHMRYRHFRPEHECSICKRRLMTQESLEQHLLWHERQEKVVCPTCGKIFSQRRDLNLHIRIHEGIKPFTCPICGKSFSRRTAQEQHILIHTGMRPYACDICGQAFAQKPGLICHRKRHPGPLPPLPVISIKKLINEFTEGLADASMEKDESASESGEKDESVQASKERDESVQGSKEKDEAVQASKEDEVKEELESRRANSRAVHECVKCGACFCHTRKLVEHLKNLHDIDRAFSCDECGKTFRSPMNIARHKRIHTDLKKFSCDLCDYRSNQKSNLEIHRRRHTKDYAFRCEECQKGFVSRAEYLVHVNIHTRKHIYRCEHCDKSYPYKKNLTTHRKRQHPSTLPADQARNVKLKYSCQVCLEGFAQKLLLNRHLKKQHGLHDKVKHLCDLCGAVLSSKRRLMEHRRGHVYEKTVKCELCDKMFASKEYLSVHRRIHTGEKPYGCSQCDRRFTQRTALILHIRQWDNGHEGLASCDDFKIKSEDILLQAGQKFEGNEKACDLCQEKFHFVTRLVAHLRIVHGIHRPFKCDTCGKTYPQQFMLNAHVKKSHTPKTIPCNQCNFMGVNATDVERHTKRHHREEKFTCEICSESFEDKDSLMTHTTMHNFMQYQQCNACGSTFNDVYSLKEHNRLYHYDPAAMMQEKLEEGDQQSSEHKCNVCGKVYKYKSVLKQHKVKAHGDTPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00087358;
90% Identity: iTF_00085600;
80% Identity: -