Abic009954.1
Basic Information
- Insect
- Andrena bicolor
- Gene Symbol
- Hr39
- Assembly
- GCA_960531205.1
- Location
- OY482665.1:21301991-21306253[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3 2.2e+04 -5.3 8.5 131 168 35 72 20 100 0.55 2 5 1 7.6e+03 -3.8 10.1 66 163 306 399 253 431 0.55 3 5 3 2.2e+04 -5.7 7.8 71 144 435 508 408 540 0.53 4 5 4.2e-08 0.00031 20.6 0.0 1 23 607 629 607 635 0.92 5 5 7.6e-71 5.6e-67 227.2 0.1 183 408 760 981 637 981 0.89
Sequence Information
- Coding Sequence
- ATGTCAGAGCAAAACGGGCCCAGCGAGGGCCCAGGACCTGGTCCAGGGCCAGGTTCGGGCTGGTGGCCAACCTCCTCGCAATCTTGGAAGGCAAACTCCGCTACATCCAGCTCGTCATCCACTAGCTCCACCGCTCCAGATAGCTCCGCCTCCGTCTCTGCATCCTGCACCACCTCTACCTCCTCCCTGGCAACTACCACTTCGGCTACGTCTTCGTCCAGCTGCTGTTCCTCGACACCTGGTGGACACTCGTGCACGATCACCGCCACTCGTTCCACGGAAACAGGGAAGAATGTCTCTGTCACCACGATCAACGTGCCACCTAATCAGGACATACGCGATGGCAAAGGTATCTGCAAATATCTTGCCGGACAGAACGGCGTGACGGTATCCGTAGTATCGAGTTGCGGTTCCGTCCTGGGTTGCGGAAACACGAACGTTCCGTCCGCGACGGGAATCGGCACTAGTAGCGGCTCGCACAGTATTGGTATCGGGATTGGGATTGGTGTTATGGGCCAGAACACCGCGGACAACGAGGCAGAGGATAGCGATGGGGAGATAAGCAAGATTGACTTCCGCGGGGTGAATCTACGCACGAAGAAGAAGCGTGACGTACTGGGAAGTGGGGAGAAAATTGGCGACGGGGATGTCGAAGACGGGAATGGTTGCTACGACGGGAACGATATTTCCCAGCAGCAACCAGAGAGACCCATGTCGTGGGAGGGAGAGCTGTCTGATCAAGAAATGTCTTCCAACACGATCACTAACCAAGACACGCACGAGGAGACGTCGATGGAAGGTGTCCAGGTGTGCAGTGCGAGTCCGGGCCCTATGGAGCAGAAGTTCCCCATAAAACCGGAGCCAGACTTTCGATCCAGCCCGGGGTTCACGTTGAGTTCCTTCCATGACGCCGGGTTGTCCCTAGCCCACGGTCAGCAGatgcaacagcagcagcagcaacagcaacaacggAACATGGAGAACCTCGAGCAGACGCAGCAAAGCGACCTACCCCTTCTCGTGGGCAAGCTACTCGGTGGTTACAATAGTTCCACCCCGAATCACAGTCCAGTGTTGAACCCTAGACACCATTTGACCAAGCACAGCCACACGAGGTCCCAGGTGCCGTCACCGGACTCCGCGATCCACTCTGCGTACAGCGTGTTCAGCTCGCCGACACAGAGCCCTCACGCAGCCCGACACTCTGCTCTCGGCGCGGGAAGTCCGGTCCCGTCTTCGTCGCTCTCCCTCTCCCGCCACAGCTTCAACAACTCGACCTcctcgttgtcgttgtcgttgtcacACTCGCTGTCGAGGAACAATTCGGACGCATCCAGTAGCTGCTACAGCTACGGCTCTCTCAGTCCACCCACCCACTCACCCGTCCAACAGCCAAGGCATCCGCAGCATCATCAGCATCAGGTAGCCCAGGGAAGTCCTCTTCATCTACCAGCAACCGGCTCGTCCGCCGTTGCGCATCATTATTCGTCCTCAGCCCCGGGCTCCGAGCTCTCTCCGGAAGCGCACGCTGTCAATGATGACCAAGAAGACTGTCGAATACCCTCCGCACCATCTGGTATCTCCACCAGACAGCAACTGATCAACAGTCCCTGCCCGATATGCGGGGACAAGATCAGCGGCTTCCACTACGGGATATTCTCGTGCGAGTCTTGCAAGGGATTCTTCAAACGCACCGTCCAGAACCGAAAGAACTATGTGTGCCTTAGAGGTGCGGGCTGCCCGGTCACCGTTGCCACCCGGAAGAAGTGCCCAGCCTGTCGCTTCGATAAGTGCCTCAATATGGGTATGAAACTAGAGGCAATCAGAGAAGATCGTACCAGAGGCGGAAGAAGCACTTACCAGTGTACCTATACGCTTCCAGCGAGCCTGGTTGGTAGTCCCGCAGGTGGTATGTCCAGTGACAAACTGGCAACAGGGGGAAACTGCAGTCCAGCTCCGCCTGGCAGTGAGCACCACTACTCCGCCAGGCATCACTCGAATCACTCGCACAAGATACAAGTGGTGCCTCAACTTCTGCAGGATATCATGGACGTGGAGCATTTGTGGCACTATAACGACAACGATCGCATGTCTGGGATCCAGTCCGGGGGAACCACCGCTGCCAGGAGCAACGACGCAATGTTGCTGGGAGTTGGCTCTGGCGCCGGAAATGATGCCGGGTCTGGAATCGAGTGCTCTTCGAATGGGACGGCTGGAAATGGAAATCTTAGTAACAGGAGAGACGGCAGATCTTGCTCTGCTGTTTCTGGTGTCAGCAACGAGCAACGTACCGCGCCCATCAACAGCAATTCACAAATTGGTAGCAATGCGAATGGCAACTCCACCCAGCATCCCGATTTCCTCTCGAACCTCTGTAACATAGCAGATCATCGGCTGTACAAGATAGTGAAGTGGTGCAAGAGTCTGCCGCTGTTTAAGAACATTTCGATCGACGATCAAATTTGTCTGTTGATTAATTCCTGGTGCGAGCTGTTGCTCTTCTCGTGCTGCTTCCGCAGCATGAGCACTCCTGGTGAAATCAGAGTGTCTCTCGGCAAGTCGATCACCCTGGAGCAAGCTAGACAGCTTGGCTTGGCGACCTGCATCGAGAGGATGCTCGCATTCACTAACAATCTGAGAAGGCTCAGAGTCGACCAGTACGAATACGTAGCAATGAAGGTGATAGTACTGTTGACCTCCGATACGAGTGAATTGAAGGAACCTGAGAAAGTTAGAGCCTCGCAGGAGAAGGCCCTGCAAGCGTTGCAGCAGTACACCATAGCAAGGTATCCAGAGATGCCAGCCAAGTTTGGTGAACTGTTGCTGAGAATTCCAGACTTGCAACGAACATGCCAGGCAGGGAAAGAATTATTAAGTGCGAAACGTGCTGAAGGTGAAGGCAGCTCGTTTAATTTGTTGATGGAATTACTTAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGPGSGWWPTSSQSWKANSATSSSSSTSSTAPDSSASVSASCTTSTSSLATTTSATSSSSCCSSTPGGHSCTITATRSTETGKNVSVTTINVPPNQDIRDGKGICKYLAGQNGVTVSVVSSCGSVLGCGNTNVPSATGIGTSSGSHSIGIGIGIGVMGQNTADNEAEDSDGEISKIDFRGVNLRTKKKRDVLGSGEKIGDGDVEDGNGCYDGNDISQQQPERPMSWEGELSDQEMSSNTITNQDTHEETSMEGVQVCSASPGPMEQKFPIKPEPDFRSSPGFTLSSFHDAGLSLAHGQQMQQQQQQQQQRNMENLEQTQQSDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPQHHQHQVAQGSPLHLPATGSSAVAHHYSSSAPGSELSPEAHAVNDDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLVGSPAGGMSSDKLATGGNCSPAPPGSEHHYSARHHSNHSHKIQVVPQLLQDIMDVEHLWHYNDNDRMSGIQSGGTTAARSNDAMLLGVGSGAGNDAGSGIECSSNGTAGNGNLSNRRDGRSCSAVSGVSNEQRTAPINSNSQIGSNANGNSTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087258;
- 90% Identity
- iTF_00763268;
- 80% Identity
- iTF_00084624;