Basic Information

Gene Symbol
nfxl1
Assembly
GCA_030264675.1
Location
JARJDV010009275.1:456350-460785[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.63 5.2e+03 -2.5 1.1 4 10 188 194 188 196 0.83
2 15 4.2e-08 0.00034 20.4 17.0 1 19 202 219 202 219 0.99
3 15 1.5e-09 1.3e-05 25.0 14.4 1 19 255 273 255 273 0.98
4 15 4.4e-08 0.00037 20.3 15.2 1 19 308 326 308 326 0.99
5 15 3.4e-09 2.8e-05 23.9 9.2 1 18 361 378 361 379 0.97
6 15 0.22 1.8e+03 -1.1 0.8 1 5 388 392 388 392 0.94
7 15 1.3e-05 0.11 12.5 15.3 1 18 413 430 413 431 0.94
8 15 0.00024 2 8.4 17.9 3 18 442 457 434 458 0.85
9 15 0.81 6.7e+03 -2.9 1.0 5 10 486 491 486 491 0.94
10 15 0.00031 2.6 8.0 4.8 9 19 506 516 504 516 0.91
11 15 0.026 2.1e+02 1.9 6.9 3 12 527 536 526 536 0.90
12 15 2 1.6e+04 -4.5 8.5 14 19 564 569 564 569 0.94
13 15 0.0012 9.6 6.2 4.6 1 11 605 615 605 616 0.97
14 15 5.6e-05 0.46 10.4 20.1 3 19 646 662 645 662 0.91
15 15 0.00039 3.2 7.7 16.0 1 16 705 719 705 725 0.91

Sequence Information

Coding Sequence
atgatgaataactTATCCTCCAACAAGAGAAATGCTTGGGCCAAACCAAATATTGATAGTGTGCAAAGAGGTGAAGCAAAATTCAGAGCAGCTCAACAAAAGCTGGAAGAGGCTGTTAAAAAGCATGCAAATGATTGTGAATCTTCAGAGGAAGAAGATGAATTAGAGACAGACAATATTATAAACAAGATTTTACAAAAGTATACACAAAATGCTACCACTATTGACATTGGTAGAACCAACTCATTTTTACAAGATGCATTTCAATCAGGTGCCAATACCTgtcttatttgcatttcatctATTAAGAGAACTGAACCAGTGTGGAATTGTGATCACTGCTATTGCTGCTTTCATTTAATGTGTATCCAAAGATGGTCTAAGGATACAATTGTCCATAAGAAACAGGCATTGGAGGCACAAGTTCAATATAGGAGAATTGTACTGAATTGGGGTTGCCCAAAGTGTAGAGCTGAATATGATCCTGACTATATTCCTAATGACTACTATTGTTTTTgtaagaaaactttaaatccACCATTTCAAACCTTGTTGGTGCCACATAGTTGTGGGAATACTTGTGAGAAGCCCTTAAAGCCTGACTGTGGCCATAAGTGCTTGCTGTTGTGTCATCCAGGACCTTGTCCACCATGCCCTCAAACAGTAAAAGTTTCCTGTTATTGTGGTGCAGCCCCACAGGTATTCCAGCGTTGTACTAATAAGGAATGGAGTTGTGGAGCTCAGTGTAACAAGGAATTATCTTGTGGTAAACATAAATGTCTGGAAGTTTGCCATCCAGGTGAATGTAAACCATGTTCAAAGAAGAGtatgcaaaaatgcaaatgcactgctagtattaaattatgcgaCTGCATATCTCCAGTTTGGCAGTGTGATAAgATTTGCAACAAGCCGTTATTTTGTGGACATCATAAATGTGAGATAGTTTGTCATGATGGCGATTGCGGTGATTGCCCTCGTTCTAAGGACAGAACGTGCCCTTGTGGTAAAACTTCTCATCAGTTGGACTGTACAGAAGAAGTACCAACTTGTGGGGATACCTGTGGGAAGCCTTTGGATTGCGGAATACACTTTTGTCAACAACGCTGCCATAAAGGAAATTGCCAAATATGTTTGGAAACTGTGAATAAGGCATGCAGATGTGGTCAACATAAGAAAGATATTCAATGTTGCAAAGCGTATCTGTGTGAGAccaaatgtaaaaatattcgaGATTGCAACAAACATGCATGCAACCGAAAGTGTTGTGATGGCAATTGTCCACCATGTGAGAAACCTTGTGGTAAAACGTTGAGTTGCAAGAAGCATTGTTGCACATCAATTTGTCATCAAGGCCCATGTTATCCTTGCAACATGACGGAAAATGTTTCGTGTTTTTGTGGCGGGACTACAATAACTGTGCCTTGCGGTAGAAAACATAGAACGAAACCGCCAAAGTGTAATAAGCTTTGCAAaaCCCCGCCGGAATGTCATCACAAATCAAGAGAAGCTCATAAATGTCACTTTGGTGATTGTCCTTCATGCCAGCAGATATGCgccaaaatatttgaaaaatgtaagcATACGTGTCCCGCACGTTGTCATTCTGCAGTTTTGGTAAAACTACAACCACCCCCAAATGTCTTACCTTGGGAGAATAAAGGACCGCAAGTGGAGAAACGTTGCTTGCCTTGTCCACCTTGCCCAGCACCGATAACAGTAACTTGCTTTGGGGGTCACGAAACTTCTGATTATCCTTGCCATCTAGCAAGGCCAATGAGTTGTCATAGACCCTGTGGTAGATTATTATATTGCAGTAATCATAAATGTTCCTTGGAATGCCACATGGTTGAAAATGCGAAAGATGGCATTACGGCAGGAAGCAATTGCGAGATTTGTAACCTGGGTTGTGACAAACCTAGAGTGGCAGGTTGTACACACCCTTGTCCAAAACCATGCCATCCTGGAGAATGTCCACCATGTACAAATATGCTAAGAATTACTTGCCACTGTGGCCTGTCGCAACCGTATGTTAATTGTTATGAATGGACAACTTCAAGAGATAAAGAATTATTGCAGAGTTGTGGAAATCAGTGTCAATTAAATttttcttGCGGACATCGTTGTCGTGCAAATTGCCACTCCGGTGAATGCCCATGTCCTGAATTATGCAAGAAGAAAGTTAAAATCTTCTGTAGCTGCAAACGTTTGAAAAAGGAATTTACATGCGATGTAGTGCGTATTGGAAATGTTTCAGTTCCATGCGACGATAGTTGCACTGAAAAGCAACttaaagaaaagaaagagAAGGAATTAAAAGATATGGAAAAACGAAAAGTACTGGAAGAGCGCAATAAGCGTGAATTggaaaagtatgaaaaaatgtttgccaAAAGGAAGGCCAAGGAAAAGAAAGTTTCCAAAGAAGTTACAGGAcgcaataatattcaaaaGTCTTCAGTTTCTACGATAGATTCCCCGTATATAAAAGATTATAAAACACCGGGAACAAAGAATTCACAAACTTCACGAAGGGTTAAATTACTACTAGAATTAAAACAgaGACGGCATTCTTCCATAGATGAAAAACGGTGTATAAGTGAAGTATTTATAGATGAAACTACAGAAAATGAAGCTCTTGAAGAACCTATGGACACCAGTGAAATCAAGGCCACTAAgcaaaaaaaatatgcaaataagcTTATGTTATCTGAATGGTTAATTGAGCGCCCAGAAGATTTAGAAGGCAATTGGTTAATGAAAGTATGTCCTAAAGGTGTCAGAAATCTTATAGTTGCTCACAAGgGAAGGACAAAATGTTTTAAGAACAATGGTCATTTTATTACTCAGTTTCATTCACAACTACCTGGAGGTAGTCCATCAAGTAAGCCAATGAAATTCACAATTTTAGATTGTATCTTTTCTGAGGAAGCAGGCATTTACTATGTGCTAGATGTTTTGGTATGGAATTCTTACTCTGTCCAAAAAGCAACTaCTGATTTCCGGTTCTTTTTTCTAAAATCAAAACTTCTAGAGTCAACAGTTGATGAAATATGTGAGGagaatagttttaaatttgaatatattcaaGAAAGACCTGCTGAATATCCCGCGATTGAGGAAGAATTCTCAAATTTTAATGGACAAATTGatggaatattattttatcattcagAATTAACTTATCTGTCACAAGTAACACCCCTTGTTGGTTggctgaaaatatttatgataccTGAAATACTTTCAATACCAATTCATCATGACTATTATCTTGAAAAGCCGGAAGactatacaaatttattacattattcaaCCCAGTTTCAAAAACGGCACAAAAAATCAAGAAAGTCAGGTTATAGGGACGTTGAAATGGCAGAAGTGAATAATAGGCTAACAGGTGTAATGGATAGTGATAGTTGA
Protein Sequence
MMNNLSSNKRNAWAKPNIDSVQRGEAKFRAAQQKLEEAVKKHANDCESSEEEDELETDNIINKILQKYTQNATTIDIGRTNSFLQDAFQSGANTCLICISSIKRTEPVWNCDHCYCCFHLMCIQRWSKDTIVHKKQALEAQVQYRRIVLNWGCPKCRAEYDPDYIPNDYYCFCKKTLNPPFQTLLVPHSCGNTCEKPLKPDCGHKCLLLCHPGPCPPCPQTVKVSCYCGAAPQVFQRCTNKEWSCGAQCNKELSCGKHKCLEVCHPGECKPCSKKSMQKCKCTASIKLCDCISPVWQCDKICNKPLFCGHHKCEIVCHDGDCGDCPRSKDRTCPCGKTSHQLDCTEEVPTCGDTCGKPLDCGIHFCQQRCHKGNCQICLETVNKACRCGQHKKDIQCCKAYLCETKCKNIRDCNKHACNRKCCDGNCPPCEKPCGKTLSCKKHCCTSICHQGPCYPCNMTENVSCFCGGTTITVPCGRKHRTKPPKCNKLCKTPPECHHKSREAHKCHFGDCPSCQQICAKIFEKCKHTCPARCHSAVLVKLQPPPNVLPWENKGPQVEKRCLPCPPCPAPITVTCFGGHETSDYPCHLARPMSCHRPCGRLLYCSNHKCSLECHMVENAKDGITAGSNCEICNLGCDKPRVAGCTHPCPKPCHPGECPPCTNMLRITCHCGLSQPYVNCYEWTTSRDKELLQSCGNQCQLNFSCGHRCRANCHSGECPCPELCKKKVKIFCSCKRLKKEFTCDVVRIGNVSVPCDDSCTEKQLKEKKEKELKDMEKRKVLEERNKRELEKYEKMFAKRKAKEKKVSKEVTGRNNIQKSSVSTIDSPYIKDYKTPGTKNSQTSRRVKLLLELKQRRHSSIDEKRCISEVFIDETTENEALEEPMDTSEIKATKQKKYANKLMLSEWLIERPEDLEGNWLMKVCPKGVRNLIVAHKGRTKCFKNNGHFITQFHSQLPGGSPSSKPMKFTILDCIFSEEAGIYYVLDVLVWNSYSVQKATTDFRFFFLKSKLLESTVDEICEENSFKFEYIQERPAEYPAIEEEFSNFNGQIDGILFYHSELTYLSQVTPLVGWLKIFMIPEILSIPIHHDYYLEKPEDYTNLLHYSTQFQKRHKKSRKSGYRDVEMAEVNNRLTGVMDSDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00049576;
90% Identity
-
80% Identity
-