Anig006590.1
Basic Information
- Insect
- Anaulacaspis nigra
- Gene Symbol
- -
- Assembly
- GCA_030264675.1
- Location
- JARJDV010005423.1:92777-95698[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 8.2 7.7e+02 0.8 0.0 3 23 7 27 6 27 0.89 2 14 0.33 31 5.2 2.1 1 23 470 493 470 493 0.89 3 14 0.006 0.56 10.7 0.1 1 23 622 644 622 644 0.98 4 14 2.7e-06 0.00026 21.2 1.6 2 23 647 668 646 668 0.97 5 14 0.0046 0.43 11.0 2.6 1 23 674 696 674 696 0.98 6 14 1.5e-05 0.0014 18.9 2.6 2 23 703 725 702 725 0.96 7 14 0.035 3.2 8.3 1.2 1 23 735 757 735 757 0.97 8 14 7.8e-06 0.00073 19.8 0.9 3 23 764 785 763 785 0.97 9 14 0.38 35 5.0 0.1 2 23 801 821 800 821 0.94 10 14 0.00026 0.024 15.0 1.8 1 20 827 846 827 849 0.92 11 14 9.6e-05 0.009 16.3 0.3 1 23 857 879 857 879 0.98 12 14 0.00073 0.069 13.5 3.8 1 23 885 907 885 907 0.97 13 14 1.2e-06 0.00011 22.3 4.8 1 23 913 935 913 935 0.97 14 14 0.00031 0.029 14.7 5.7 1 23 941 963 941 964 0.96
Sequence Information
- Coding Sequence
- ATGGAGAGCTCAGTGATCTGCCCAGTGTGTACACTCTTTTTGAGACCTGGGATGTCATTAGCATCTCACTTAGAATTGCATTCTAAAGAAAAACTGATTGAAGTTATGGTAAAATGGAATGGCAAATCTGAGACAGTGGTTGATGATATTCCACCCTTGGTACCAGTCACTTCAAAAGCACCAACCCAAATACTTCCACAGCCATGGATTGCTGGTGGACCAACACCTTGTATGCCATCAGTTCCAGTGTTTACTCCTGGTACACCTGTGCAAATAGGACAATCTCTGCCTGCTGCTGTAGGGCAGCCTCTGCTAACAATGCCACATCAGCTTTCACAAACAGTTGCTGGAAGTAATGCTTCCAGTCAAGGCAATCATTCATTCTTCTATCAGCAGATTATGAGCTCATCAACCCCACCAGCACCAACAAGTTATATACATCACAATGGTGTACCCATTCCAATATATGATCAGCCAACTTTCCCACAATTTGTGtaccaacaacagcaaatgTTCATGTCTTCTGGGCCTCCACCTTTAGTTCCCATTGGCGGTTCAGACACAATAACTCAAAAAGAGGAGAAACCAAATAGTCAGAATTCATTACCACAAATTATTGAGATTCAGGATAATCAAATTGTTCAGGATATGGTTGATCAGGACATGGATACCTTAAAGTCAACAGAAGAAGGGTCTTCAGATGAAACTGGGCAGGAGAATGAAGCGACTGTAGATAACATTAAATCACCAAGTCCTGTTGCAATTGTTGATGAGGTAGATAAGCCATATGAGACAATAACTGATGCTTATTTTGAGACAGAGGTGCAACTTGAGAGAATGAAAGGTGACGAGAAATTAGATATTGAAATTGGGCCAGAGATGGTACATTTGGGCGGAGAAAGAACGCCCGAAGTTGAAGCCTATGCACTTGACCAAGaagttaatcataattttgatGTAGGCGATGTAAATTTGGATTTAGGACAAGAGTTTGTCGAATCGCAGAGCACTGAACCGTCCACAACTGAAGAACACGATTATTCAGGGGACGCATTTAAATCCGAACGTCCATCTATTTTGATGAGtataaatgattttgaaaatcgtGACGAGAATATTTCGACGGATAGCGTAAATATGCGCTCAGATGAAAATATACCTCCGAGAGGCGAATTGTCGGGCCAAGAAAGCAATGCTAGTGATGTGGCTTCATGGTCTCGTTTGCAGTACCAAGAAGGCTCATCGAGAATGTCCACTGCCATGTCGACTTATGATTTACTTGCAAGAGAAAGCTGGGAAGGATCAGATGTGTCCGAAACAGATGAACCGCCTCCGTATCAGAGTCGTTCTCCAACTTCTATTGTTGCTGGGGATGACGATGCCAGCACGAGTAGACCGAGGATCAGTTACAAGTGTAATTCATGCGATATGTCATTTCCGTGTCCAAAGGAGCGACGTGTTCATCAATCGGAGACTCACGGTACGAGCAGTAATATGTCCACTCCCGATAGTCTGGTTGTGTGTAAGGCTGATATGAAGCCGATTCCAAATGATCCGAGTAGTACCGCTGGCTTGCCAATATTTGGTCAAACTGTTAATAAACTGCTTATTAAATCCAAGAGCGAGGAGGAAGTTAAGACTGATTCAATAGAAAGCTCATTCGatcacatttttaataatattattaattttaatgaagatgatACACCCGCGAAAAAGCCTGCAGTCGCTGGTGTGGATTTGGCCGTATGCGATGAGAGGTTTGCAAATACGATTATTTGCGTGATTTGTTGTTCGGTTGTCAATGATTGCACGTTGAAAGAACATCAAATGAACATCCACGGGTTCAGCTTTGAGACAAAGTATAAATGTGGAGTTTGTTTGGAAGAGTTTACGACCGAGCCGCCATACACGAGGCATTTAAGTGTCCATCCGCTGGAATGTCAGCAGTGCGGTAAACATTTTTACCGCTGGAATAATCTCGCACTTCATATTAAACGGCATCTTGGTATCAAACCCCATAAGTGTACAATGTGTGCTAAATCTTTTCTTACTAGGCAGAAATTGGTGGAGCATATCAATACGCATACGGGAGAAGCACCACTCAAATGCACAATGTGCTCAGAGACTTTTAAGCGTTATTCCAATCTTATTCAACACCGAAATCGACGCCATTTGATGGTGAAAAAGCGCCTCAAAGATTTTATTTGCCCCACTTGTGGCGATTTATTCCACTCGAAAAAGAAGCTCGCATGGCACAAAGAAACGCATGAAAATAAGCCCAAGGCATGTCCTTATTGCAATGAGAAATTTGTGCACACGGTGAGCCTAACACGGCACATCAGAAGAGCGCATAACGATAGATTTGTCGCAGATGCGGAACGTGCTAATCAGAATGTAGAATGTCCGATATGCAAGGGTATTTATATGCGTAGTTCGCTGGACACCCATATTAAGAACCATGGAAGAACGAAGCAATATAGTTGCACATTGTGCTCAAAAGATTTTAGCACCAAGTGGAATCTGAAGCTGCACAAGTGGACTCATACGGGCCGCGCGCAAAAACCCTTCCAGTGCGAGTTATGCAGTAGCGGTTTTGTGCGCGAATCCGACTACACCGCACACATGAACTCTCACAAGTCTGTGCGGCCGTTTACGTGCAATTATTGCGGTGCCCAGTTTATTCGCAAGTATAATTGTCAGCGACATGTGAAAGAACATGAGCGCGTCAAGACCCATTCGTGCAATGTATGCGGTAAGACATTCCACAGATCGTATTATCTTAATGATCATATGCGCGTTCACAATGGTGCGCGACCTTTCGTTTGCCACATTTGTGGGAAGACAAGTGCGACGAAGAGCAATCATAATAAACATGTGAGAATACATCATGCACGCGAGCCTGTAACAACTGagaattga
- Protein Sequence
- MESSVICPVCTLFLRPGMSLASHLELHSKEKLIEVMVKWNGKSETVVDDIPPLVPVTSKAPTQILPQPWIAGGPTPCMPSVPVFTPGTPVQIGQSLPAAVGQPLLTMPHQLSQTVAGSNASSQGNHSFFYQQIMSSSTPPAPTSYIHHNGVPIPIYDQPTFPQFVYQQQQMFMSSGPPPLVPIGGSDTITQKEEKPNSQNSLPQIIEIQDNQIVQDMVDQDMDTLKSTEEGSSDETGQENEATVDNIKSPSPVAIVDEVDKPYETITDAYFETEVQLERMKGDEKLDIEIGPEMVHLGGERTPEVEAYALDQEVNHNFDVGDVNLDLGQEFVESQSTEPSTTEEHDYSGDAFKSERPSILMSINDFENRDENISTDSVNMRSDENIPPRGELSGQESNASDVASWSRLQYQEGSSRMSTAMSTYDLLARESWEGSDVSETDEPPPYQSRSPTSIVAGDDDASTSRPRISYKCNSCDMSFPCPKERRVHQSETHGTSSNMSTPDSLVVCKADMKPIPNDPSSTAGLPIFGQTVNKLLIKSKSEEEVKTDSIESSFDHIFNNIINFNEDDTPAKKPAVAGVDLAVCDERFANTIICVICCSVVNDCTLKEHQMNIHGFSFETKYKCGVCLEEFTTEPPYTRHLSVHPLECQQCGKHFYRWNNLALHIKRHLGIKPHKCTMCAKSFLTRQKLVEHINTHTGEAPLKCTMCSETFKRYSNLIQHRNRRHLMVKKRLKDFICPTCGDLFHSKKKLAWHKETHENKPKACPYCNEKFVHTVSLTRHIRRAHNDRFVADAERANQNVECPICKGIYMRSSLDTHIKNHGRTKQYSCTLCSKDFSTKWNLKLHKWTHTGRAQKPFQCELCSSGFVRESDYTAHMNSHKSVRPFTCNYCGAQFIRKYNCQRHVKEHERVKTHSCNVCGKTFHRSYYLNDHMRVHNGARPFVCHICGKTSATKSNHNKHVRIHHAREPVTTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00049434;
- 90% Identity
- -
- 80% Identity
- -