Alud018873.1
Basic Information
- Insect
- Anastrepha ludens
- Gene Symbol
- -
- Assembly
- GCA_028408465.1
- Location
- JAPVRI010082496.1:922-2757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.028 4.7 9.3 0.4 1 23 170 192 170 192 0.95 2 11 7.4 1.2e+03 1.7 0.2 10 23 210 224 202 224 0.77 3 11 0.11 18 7.4 0.6 3 22 231 250 229 253 0.83 4 11 1.9 3.2e+02 3.5 1.2 1 23 260 289 260 289 0.77 5 11 0.25 41 6.3 0.2 1 23 364 387 364 387 0.94 6 11 0.0015 0.26 13.3 2.8 2 23 393 414 392 414 0.96 7 11 2.7e-06 0.00046 21.9 0.3 2 23 430 451 429 451 0.98 8 11 4.8e-05 0.0081 18.0 0.5 2 23 461 483 460 483 0.96 9 11 2.1e-06 0.00036 22.2 2.9 1 23 489 512 489 512 0.96 10 11 0.00062 0.1 14.5 8.0 1 23 518 540 518 540 0.96 11 11 0.13 22 7.2 3.6 1 23 546 569 546 569 0.94
Sequence Information
- Coding Sequence
- ATGGGTCAATTGTGCACAGATAAGATTTTGTTGGAGATTTTCAAAGAGCAAAAAACGCTAGACAAATTTATTGAGACCATTTTCGGATTTCTGGTACGCAAcacGAATTTCGGTTTAATAGACACTTCAGAAAGAGCGCGAATACAGCGACATATATGTGATGCATTGACGTTTTGGTGCCCTGTACAACAAACATCGTCTAGGACGAAAAATGTCACCACCGAATGCGAACCACCTGCAACAACAGAGACTGGAATTGGAGCAGAATCTGGCAACGTAGGATCGGAGTTGCAATGGACATATTTAGCACAAGCACGAAACGCGACTTCGGAGGGTCATCTGGTTCTTAATTCAGATCACGGAATATTTAATGCAgtACAAAAGAACGAACCCAATATCAAGTATCGGGCAATCCTACCCAAAGAGCAGCATTTAGTGCTAAGTAATATGCCCACGATTTTCCATAAAACGaatgatgaaaaattaaaaaacaattcgaAAAGATTGTATAAATGCAGCGAATGTTCGGACATATTTATTTCGTTTCGCCAGCTGAAAGTGCACGAAGCGCTTCACACCTCCGTGACAGACAGGGTTATCAGTATTTGTGTTTATTGCTGCAGCTTGTACGCCAACGCGGAAACTTTAGAAAAACATATCAGTGAGAGCCATGCAAATGGACGATACCTCTGTGCACCGTGTGCAAAAACATATAAGAGTCGTGGGCAGTTGCTTAGGCACGTGCACTCTAGTGCACACAATGCCAAAGCACTTCTGTTCTATTGCAGTCTATGTCCCCGCACCGGAAACTCGCATATAGAGTTTCCCTCAAGGGCAGCACTACAGCAACACTACCAAGAAATGCATTTACTTATGCCTGCGAGCCAAGATGAAGACGATGTCGAAATTGAAATGAACGAAGAATTTCTTGATGAATTTCTTCTAAATAATGTTAATGAGAACTCGTTTAATTTTTCCGAATGCTGGGATGCATTAGATTTAAATTTGCCAGATATGTTGCATTTGGCGAATTCCGATGAAAATTACTCACATAACAAAAATAGCATAATTCAAAATAACGAATTTCCCTTCAAATGTCCAATATGTTATGACGGCTTTTTGACCCAAAAGCTTCTATTGCTGCATATTGCTTCCAAACATGGACTGAAGGTGTTAATTTGCAATAAATGTGACTCGAGTTTCAAGGATTACACACAATGGGTTCATCATAAAAGGACTCATCGGGTTCAATTTGATGCAATGCGAAAAGCTAAAGATGATTTGATGAAGTGTGAGATATGCGACAAAATATTTCGAAGCAATGCCGCACTCAACTACCATGTAAAGACGCATTTGCGTAATTACTTACAAGTGCCGCAGGAATGTCCATACTGCAAAAGGAACTTTTACTCCGATGTTAATTTTAAACAACATATTCGTATCGTACATTCACTGAATAAACGACACAAATGTGAGCTTTGTGACAAACCGTTTGCTACGCAGgatcatttaaaaaaacatgttttgagCCAACATCAAAATGAACGAAAACATATTTGCCATGTCTGCTCCAAATCCTTTACACAATTGTGCCACCTTAAGCAACATCTGGCAATACACACTACCGGCAAAGCACACCAATGTATAAAATGCAAACTGAGATTTTGGCGTAAAATCGATCTGCAGCGgcatatgttaaaaaaacattcataA
- Protein Sequence
- MGQLCTDKILLEIFKEQKTLDKFIETIFGFLVRNTNFGLIDTSERARIQRHICDALTFWCPVQQTSSRTKNVTTECEPPATTETGIGAESGNVGSELQWTYLAQARNATSEGHLVLNSDHGIFNAVQKNEPNIKYRAILPKEQHLVLSNMPTIFHKTNDEKLKNNSKRLYKCSECSDIFISFRQLKVHEALHTSVTDRVISICVYCCSLYANAETLEKHISESHANGRYLCAPCAKTYKSRGQLLRHVHSSAHNAKALLFYCSLCPRTGNSHIEFPSRAALQQHYQEMHLLMPASQDEDDVEIEMNEEFLDEFLLNNVNENSFNFSECWDALDLNLPDMLHLANSDENYSHNKNSIIQNNEFPFKCPICYDGFLTQKLLLLHIASKHGLKVLICNKCDSSFKDYTQWVHHKRTHRVQFDAMRKAKDDLMKCEICDKIFRSNAALNYHVKTHLRNYLQVPQECPYCKRNFYSDVNFKQHIRIVHSLNKRHKCELCDKPFATQDHLKKHVLSQHQNERKHICHVCSKSFTQLCHLKQHLAIHTTGKAHQCIKCKLRFWRKIDLQRHMLKKHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00081631;
- 90% Identity
- iTF_00081631;
- 80% Identity
- -