Afra037073.1
Basic Information
- Insect
- Anastrepha fraterculus
- Gene Symbol
- -
- Assembly
- GCA_037575425.1
- Location
- JAYXIM010050388.1:256187-258016[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.03 4.2 9.3 0.4 1 23 168 190 168 190 0.95 2 11 8 1.1e+03 1.7 0.2 10 23 208 222 200 222 0.77 3 11 0.12 16 7.4 0.6 3 22 229 248 227 251 0.83 4 11 2.1 2.9e+02 3.5 1.2 1 23 258 287 258 287 0.77 5 11 0.0075 1 11.2 0.2 1 23 362 385 362 385 0.96 6 11 0.00099 0.14 14.0 2.9 2 23 391 412 390 412 0.96 7 11 3e-06 0.00041 21.9 0.3 2 23 428 449 427 449 0.98 8 11 5.2e-05 0.0071 18.0 0.5 2 23 459 481 458 481 0.96 9 11 6.7e-06 0.00093 20.8 2.5 1 23 487 510 487 510 0.96 10 11 0.0015 0.21 13.4 9.1 1 23 516 538 516 538 0.96 11 11 0.17 23 7.0 3.7 1 23 544 567 544 567 0.94
Sequence Information
- Coding Sequence
- ATGGGTCAATTGTGCACAGATAAGATTTTGTTGGAGATTTTCAAAGAGCAAAAAACGCTAGACAAATTTATTGAGACCATTTTCGGATTTCTGGTACGCAAcACGAATTTCGGTTTAATAGACACTTCAGAAAGAGCGCGAATACAGCGACATATATTTGATGCATTGTCGTGCCCTGTACAACAAACATCACCTAGGACGGAAAATGTCACCACCGAATGCGAACCACCTGCAACAACAGAGACTGGAATTGGAGCAGAAACTGGGAACGTAAGATCGGAATTGCAATGGACATATTTAACACAAGCACGAAACGCGACTTCGGAGGATCATCTGATTCTTAATTCAGATCACGCAATATTTAATGCAGTACAAAAGAGCGAACCCAATATCAAGTATCGCGCAATCCTACCCAAAGAGCAGCATTTAGTGCTAAGTAATATGCCCACGAATTTCCAAAAAgcgaataatgaaaaattaaaaaacaaatcgaaaagATTGTATAAATGCAGCGAATGTTCGGACATATTTATTTCGTTTCGCCAGCTGAAAGTGCACGAAGCGCTTCACACCTCCGTGACAGACAGGGTTATCAGTATTTGTGTTTATTGCTGCAGCTTGTACGCCAACGCGGAAACTTTAGAAAAACATATCAGTGAGAGTCATGCAAATGGACGATACCTCTGTGCACCGTGTGCAAAAACATATAAGAGTCGTGGGCAGTTGCTTAGGCACGTGCACTCTAGTGCACACAATGCCAAAGCACTTCTGTTCTATTGCAGTCTATGTCCCCGCACCGGAAACTCGCATATAGAGTTTCCCTCAAGGGCAGCACTACAGCAACACTACCAAGAAATGCATTTACTTATGCCTGCAAGCCAAGATGAAGACGATGTCGAAATTGAAATGAACGAAGAATTTCTTGATGAATTTCTTCTAAATAATGTTAATGAgaactcttttaatttttccgaaTGCTGGGATGCATTAGATTTAAATTTGCCAGATATGTTGCATTTGGCGAATTCCGATGAAAATTACTCACATAACAAAAATAGCATAATTCAAAATAACGAATTTCCCTTCAAATGTCCAATATGTTATGAAGGCTTTTTGACCCAAAAGCTTCTATTGCTGCATATTGCTTCCAAACATGGACTGAAGGTGTTAATTTGCAATAAATGTGACTCGAGTTTCAAGGATTACACTCAATGGATTCATCATAAAAGGACTCATCGGGTTCAATTTGATGCAATGCGAAAAGCTAAAGATGATTTGATGAAGTGTGAGATATGCGACAAAATATTTCGAAGCAATGCCGCACTCAACTACCATGTAAAGACCCATTTGCGTAATTACTTACAAGTGCCGCAGGAATGTCCATACTGCAAAAGAAACTTTTACTCCgatgttaattttaaacaacaTATTCGTATCGTACATTCACTGAATAAACGACACAAGTGTGAGCTTTGTGACAAACCGTTTGCTACGCtggatcatttaaaaaaacatgttttgagCCAACATCAAAATGAACGCAAACATATTTGCCATGTCTGCTCCAAATCGTTTACACAATTGTGCCACCTTAAGCAGCATCTGACCATACACACTACCGGCAAGGCACACCAATGtataaaatgcaaattgaaattttggcGTAAAATCGATCTGCAGCGgcatatgttaaaaaaacattcataA
- Protein Sequence
- MGQLCTDKILLEIFKEQKTLDKFIETIFGFLVRNTNFGLIDTSERARIQRHIFDALSCPVQQTSPRTENVTTECEPPATTETGIGAETGNVRSELQWTYLTQARNATSEDHLILNSDHAIFNAVQKSEPNIKYRAILPKEQHLVLSNMPTNFQKANNEKLKNKSKRLYKCSECSDIFISFRQLKVHEALHTSVTDRVISICVYCCSLYANAETLEKHISESHANGRYLCAPCAKTYKSRGQLLRHVHSSAHNAKALLFYCSLCPRTGNSHIEFPSRAALQQHYQEMHLLMPASQDEDDVEIEMNEEFLDEFLLNNVNENSFNFSECWDALDLNLPDMLHLANSDENYSHNKNSIIQNNEFPFKCPICYEGFLTQKLLLLHIASKHGLKVLICNKCDSSFKDYTQWIHHKRTHRVQFDAMRKAKDDLMKCEICDKIFRSNAALNYHVKTHLRNYLQVPQECPYCKRNFYSDVNFKQHIRIVHSLNKRHKCELCDKPFATLDHLKKHVLSQHQNERKHICHVCSKSFTQLCHLKQHLTIHTTGKAHQCIKCKLKFWRKIDLQRHMLKKHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00083388; iTF_00082432;
- 90% Identity
- iTF_00082432; iTF_00083388;
- 80% Identity
- -