Basic Information

Insect: Anastrepha ludens
Gene Symbol: L
Assembly: GCA_028408465.1
Location: JAPVRI010040323.1:999-8356[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.8e-06 0.00081 21.1 1.7 1 23 145 167 145 167 0.98

2 16 0.4 68 5.6 5.8 1 23 173 195 173 195 0.98

3 16 2.1e-07 3.5e-05 25.4 3.1 1 23 201 223 201 223 0.99

4 16 9.6e-06 0.0016 20.2 0.3 1 23 229 251 229 251 0.98

5 16 0.51 87 5.3 1.5 2 23 315 338 314 338 0.90

6 16 0.0039 0.66 12.0 0.1 2 23 367 389 366 389 0.96

7 16 0.078 13 7.9 0.9 1 23 481 503 481 503 0.97

8 16 0.41 70 5.6 2.3 2 23 511 532 510 532 0.94

9 16 0.00032 0.054 15.4 0.1 1 23 540 565 540 565 0.89

10 16 3 5e+02 2.9 0.1 1 19 570 588 570 590 0.88

11 16 1.6 2.6e+02 3.8 0.9 2 23 601 623 600 623 0.95

12 16 0.016 2.7 10.0 4.5 1 23 660 682 660 683 0.96

13 16 0.45 76 5.5 0.3 1 23 857 881 857 881 0.91

14 16 0.00091 0.15 14.0 4.6 2 23 890 912 889 912 0.96

15 16 0.11 19 7.4 0.1 1 23 918 940 918 940 0.92

16 16 0.016 2.7 10.0 0.3 2 23 948 969 947 969 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.8e-06	0.00081	21.1	1.7	1	23	145	167	145	167	0.98
2	16	0.4	68	5.6	5.8	1	23	173	195	173	195	0.98
3	16	2.1e-07	3.5e-05	25.4	3.1	1	23	201	223	201	223	0.99
4	16	9.6e-06	0.0016	20.2	0.3	1	23	229	251	229	251	0.98
5	16	0.51	87	5.3	1.5	2	23	315	338	314	338	0.90
6	16	0.0039	0.66	12.0	0.1	2	23	367	389	366	389	0.96
7	16	0.078	13	7.9	0.9	1	23	481	503	481	503	0.97
8	16	0.41	70	5.6	2.3	2	23	511	532	510	532	0.94
9	16	0.00032	0.054	15.4	0.1	1	23	540	565	540	565	0.89
10	16	3	5e+02	2.9	0.1	1	19	570	588	570	590	0.88
11	16	1.6	2.6e+02	3.8	0.9	2	23	601	623	600	623	0.95
12	16	0.016	2.7	10.0	4.5	1	23	660	682	660	683	0.96
13	16	0.45	76	5.5	0.3	1	23	857	881	857	881	0.91
14	16	0.00091	0.15	14.0	4.6	2	23	890	912	889	912	0.96
15	16	0.11	19	7.4	0.1	1	23	918	940	918	940	0.92
16	16	0.016	2.7	10.0	0.3	2	23	948	969	947	969	0.97

Sequence Information

Coding Sequence: aTGTACTCAACGCACACCTCCTCAAATTACTCACCTTCTATATCAGATGGCACCTTAACGCCAAACTCTTTACAACACCAAGAACAAACAACGTCACACAACCCGCATGTACAAAGGACGCAATATTGCCCGCAGCCAAATGGTAGCAAAGTTGGGAATATTGACGAAAGTGAAGTGGAGGGTAATGGAGATGTCAAAGCGTCAGTGAAAAACTCAACAAATATACTCGAATCTGCGAAGCTAGAAGAAGACGGTGCCAACTTGGAATTGCAACACAAACGACAGACTCGCATTCATCGTCAGCACCTTTACCACCATGGAGAGTATCACAGCTCGAAAATCGTTACAAAAGTGCGGAAAATCGAAAGAGTTGCTGCAAAGTTTGATAAGTTGACAGGTGATGGCATTAACGGTAGCGGTGCTGATGGGTCTTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGGCTTGGTTATTTAAAAAAGCACGAACAGAGCCATACCGAGCATTTACCTTTTAAGTGTGATTATTGTGCTCGACTCTTTAAGCACAAGAGATCGAGAGATCGTCATACCAAACTTCACACTGGGGATCGCCGATACCGCTGTCCACATTGTGAGGCAGCATTTTCTCGAAGCGATCATCTCAAAATTCACATGAAAACACACGACAATCAGAAACCATTCCAATGTACGATATGCAATCGCGGATACAATACCGCTGCTGCGTTAACCTCGCATATGCAAAACCATAAAAAACAAGCAGCTATTCTAGCAGCAGGAGGAAATCCTCAAGCACTTAATTACAGTCCACGTTCTACTGGATCTGTTTCCAGTAGCGGAAGTTTCCACAAGAGGCGCTATGCCACGACATTGGCTCACACTGATGCTAAGCCAACCCGACTAGATTATCCAAAGCGACCACGAACTGTGAATCTTCTTTCCTGTAATTACTGCTCCAAGTCCGAGTTCAACTCGATTGAACAACTCAATGTACATATTCACACAAAGCATGACAAAGAAGTGTTTTCCTCGCAAAAAACACAGCCAATGGCCGCTCTTGGGGCCGCAGTTGCTGAACCAAATCCATTCCAGTTGAGATGTGAGTACTGTACTATGCAATTTGGAAATCTACCTGCGTTATTTCAGCATATCCGTCTCGCACATGTCGATCGTTTGGCAAGCCCAAACTCGTACTTCGAACATTTCAACCGTTTAGCTGCATCAGGGACTTTTAGTCCTCGCTTAGTGAGTGAAAAACCCACTttgagagaagaaaatactacAAAGGAAAGTAATATTAAGGCAGAACAAAATTTACCATGCTCGGAAAACGCCAATGAGGAAAAACAAGAGGAAGAGCCCACTGACCTTAGCAAAAATAAACGCCGTTCAACAACCCCCGTTTCTCTTCAGGAGGAATCTCTTCAGCCTGACATGTTTTTCTGCAATCAATGCAATGCAGGTCTGCCAGATTTTGAAAAGTTCCGTAGTCATTTAAAAACGCATATAACGCAAGGTTTAAATCTTATTTGCCACCACTGCGGTTTGGCGTTACGGGAACAATCGGAGCACGAGCGGCATGTAATCTCACATTATTTAATCTCTAATTCAGAATATATTTGTGCAAGCCCTAAATGCGACAAATCGTATGCAAAACCTGAGGAGCTTCAAAACCATATGTTGGATCAGCACGCAATCCCTATGTTCAAGTGTGGTGTATGCTCTGAATTATTCGAGTCCAAAATAGCCATTCAGATGCACTTCGCTTGTGCACATTCCGTTGAAACTAAATTATTGCGATGTTCAGTCTGTATGGAATTATTCCAATCTGAGAGAGAGTTCAATACGCACGTAAAAACACGCCATCCAGGACTTAATGGACCAGTGCCCAATTCACTTCAATGTTTGTTTTGTCGAACTGTATGCGGTAATGATTTGGAAATGCATTTTCATCTCGCCGCACATGCTCGCCAGTTCCAATGCCCCTCGTGTCCAGAAACTTTTCATGTGGAGTTTCTATTGGATCGACATATGCAACACCATCATACTGGCAATAATCGAGCGGCATTATCTTCAAAAATATCCCTTGAGGAAGCTTCAATACCATCTAATATGCCGAATCAAATGAACCCTCTTTATGTGAATGCCTTACTTAGCAAAGCTCCCCAGATGCCGATTACTTCGCAAAACAACAACTCTAGTGTTCTTGATTACAATATAGCTTTTGCAGCTCATCTCAATAAAAGCCTTTTCCCTGGTTCCACGGCATCAGCAACTCCATTCACAGACGACAAATTTTATAATGCATTGCAGGTAGATACAGGAGCCGTGAAACACCCTGGGCTCATGTATGGCCTCAGCCAGCGCTATTTCGATACAAGCCGAACACTAATTGAGATGTATACGCAGCAACGAATAGATAAACCAATAGTGGAAAGCTATTTCAATAGTCCGAAGCCGCAATCCGTTACACAGCATTTAAAATCTCAACCAGATTTACATGAAAATCGACCGCCAGCAGAATCGTCAAATCCGACTTCGGTTGGATTAAACTCTTCCATGGGTTATAGCTGTGATATTTGCGAACGCAATGATTTTCGATCTGAAAGTGAGGTGAACTCACATCGTAAAATCGTCCATAACATGAAAACTGGAGTGAGTTTGCGATGCGCCTACTGCTCGGGGAACTTTAAGTCACGTAGCGAATTGGAACATCATATGAAAACGTGTCACAATTCAACTGGAAAACATAAATGTCTGATTTGTGATGAAATTTTTCCCTCGTCAGCTATATTGGCAGAACACAAACTACAACACTCAAAGGTTGGTCAATCTGGCAAATGTTCACACTGCAGTAAGCCCTTGGACGGCGCTTCAGCTTTCAAAGCACATCTTAATGACCATAACAATGAGAGCCAACTTCCAATGCAATGTATTTGCTGTCGACAATCACTTCATTCCGATTTTGAAATCGGTTTACATGCACAGTAA
Protein Sequence: MYSTHTSSNYSPSISDGTLTPNSLQHQEQTTSHNPHVQRTQYCPQPNGSKVGNIDESEVEGNGDVKASVKNSTNILESAKLEEDGANLELQHKRQTRIHRQHLYHHGEYHSSKIVTKVRKIERVAAKFDKLTGDGINGSGADGSYQCQFCDKSFPRLGYLKKHEQSHTEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAAILAAGGNPQALNYSPRSTGSVSSSGSFHKRRYATTLAHTDAKPTRLDYPKRPRTVNLLSCNYCSKSEFNSIEQLNVHIHTKHDKEVFSSQKTQPMAALGAAVAEPNPFQLRCEYCTMQFGNLPALFQHIRLAHVDRLASPNSYFEHFNRLAASGTFSPRLVSEKPTLREENTTKESNIKAEQNLPCSENANEEKQEEEPTDLSKNKRRSTTPVSLQEESLQPDMFFCNQCNAGLPDFEKFRSHLKTHITQGLNLICHHCGLALREQSEHERHVISHYLISNSEYICASPKCDKSYAKPEELQNHMLDQHAIPMFKCGVCSELFESKIAIQMHFACAHSVETKLLRCSVCMELFQSEREFNTHVKTRHPGLNGPVPNSLQCLFCRTVCGNDLEMHFHLAAHARQFQCPSCPETFHVEFLLDRHMQHHHTGNNRAALSSKISLEEASIPSNMPNQMNPLYVNALLSKAPQMPITSQNNNSSVLDYNIAFAAHLNKSLFPGSTASATPFTDDKFYNALQVDTGAVKHPGLMYGLSQRYFDTSRTLIEMYTQQRIDKPIVESYFNSPKPQSVTQHLKSQPDLHENRPPAESSNPTSVGLNSSMGYSCDICERNDFRSESEVNSHRKIVHNMKTGVSLRCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSSAILAEHKLQHSKVGQSGKCSHCSKPLDGASAFKAHLNDHNNESQLPMQCICCRQSLHSDFEIGLHAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00081607;
90% Identity: iTF_00081607;
80% Identity: -