Alud014977.1
Basic Information
- Insect
- Anastrepha ludens
- Gene Symbol
- -
- Assembly
- GCA_028408465.1
- Location
- JAPVRI010067883.1:12719-16004[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.43 72 5.6 0.3 1 23 633 656 633 656 0.93 2 11 9.2 1.5e+03 1.4 0.0 2 10 662 670 661 685 0.82 3 11 2.9e-05 0.0049 18.7 1.3 2 23 721 742 720 742 0.96 4 11 0.007 1.2 11.2 0.5 1 23 748 771 748 771 0.89 5 11 0.022 3.7 9.6 5.1 2 23 779 801 778 801 0.95 6 11 7e-06 0.0012 20.6 2.3 2 23 811 833 810 833 0.95 7 11 1.2e-05 0.0021 19.8 2.9 1 23 857 879 857 879 0.98 8 11 0.068 12 8.1 5.4 1 19 887 905 887 910 0.93 9 11 1.7e-05 0.0029 19.4 0.7 1 23 916 938 916 938 0.98 10 11 5.5e-05 0.0093 17.8 1.4 1 23 945 967 945 967 0.98 11 11 1.5e-05 0.0025 19.6 1.8 1 23 972 995 972 995 0.96
Sequence Information
- Coding Sequence
- ATGGGTAGCAGCGTGTACTGTCGCACCTGTGCAGCACCTCCTGGGAACGCAGCCGAAGCAGTGATCGACATTTTCGCAAACGCTAAATTAATTGCGATTTTAAGTACGCTAAAGGAGTGGCAATTAGATATTATGCAGGATGATAATTTATCTCAGCGTATTTGTAAGACGTGCGAATTGGCGCTAATACAGATAGACGCATTTCGGTTACAAGCTTTGAGAGCAAAAGAGCATCTTCATTTGAGTTTGCACTCATTGGAGACGATGGTGGGGGATGCTGAAGCAATCAACGACAATGAAAATGACCTTCATACTAAAACAAATTGTGGTGAAGCGGAGATGTACAACAGGCAAGCCGCACCGAACACATTTCCAACAATATCCGAGTTTACTGCTATGCATGCGGATGATAGAGTGCCGAATGTTATAAATGCAAATAAGAAAGGGAGCAAAGAACAATTAATTGAGTTTGAATCAGGTTTAAATGCAGCCAATGTACAAACCGGTGAGTTATCGTTTGATTCGAATATTGAGTCTAGCAGACCACCCGAATTTCAGGTAGTACTAATTGAGGAGGAGGAGGAGACAAATTTGCAATGGATAAGTGAAGAAGATGATGCTGGAGAGAAGGGGATTGATGTACCAAATAGTGAAATTTCAGAGTGCAGTGTGCATGTGCGAGAGGTTGAGCGTGAAATTGACACCAATAACAACTCAGTAGGGACTGCCGCGGGCAAGtctataaattttaatagatcAACGCAGCGCACAAATGCAAAAAACGTTATAGAAGAGGGCGAGAAAGTCTGTTTAAGCAAGaacatttcatttgatttacaaaaatacgTATGCCGAACAACTGACTACAAAATCGGAAAAAGTAGATCAAAAGGAAAGCCTTGTAAGGATGTTCAAAGGCATGGTGCGCAAAAAGTCATACCAAACAACGGAAAAGACAACCAATTTACATGGGTCATTACAGAAACATCAAGAGAAATTGCTGCTCCTATGTCCGATAAAAAAGGAATCGTGGCAGATTACCAATCTGAAATACATGAATTTGAAACGTTGCTAGCTGCAATAAACGATCAAGTCGCTGCCTTTGAATCAGGTAAAGAGTCAAATGCGTATTTGTCTGATGACTTACAATCGGTGCTTATGAATGAGTTAACACTGCAGATGATCaatgcaaatgtaaatattcTGGAAGAAGACTTGCAAATTGATGAGTTTGAAATGATGCTGGCAGCAGTTGATGAGCAGGCCTCCACATTGGGATCTATAAATACGCCAAGACAGACAGCAGAGATACCTGACCGACAGATGGTgcataaaaatggttttaacGAAGAAATAGATCTAGATATTCCAGAAAATCAAGAGAGTATACTAAAAGAAATGGAAGCCCTAAAAAAAGAGGATTTTTCAGCTTTATATGAGAAGAGTAGCGCAACAGACACTGTAGATTTTTCTCATTCTACTAGCgaagctaaaataaaaatatataattcttCGTGCGTTGAGTCTAAAATTACAGATTATGCCCATTATCACTTTTCGCCAAATAAGATTAAACGCATAATAAGTGATGATAATGTTTCAGATGTTTTATGCGGTGTATTAAATGAACCTGATTACAAAAAGATATATAATGGGGAATCGCTTGGCAAAGCTAATACTgagtttatcaaaaataataataacattcaaAATGCAGCTCTTGGGGATAGAGAAATCGAGCATTCAACTACAGTGGTTCCACGTCCAAATAAAAAGTCTTCGAATGGCATGCGATGCCGACTGTGTGTGTACAAGGTGTCGGAGCAGCCGATTTTCGCAACGAAAGAGCTCCTGGCCGAGCACATAGCTTCGATACATGATGACAAGGAGCGGCCATATAATTGCCCTCAATGTGCGGCACGGTATCGTACACGGAGTGGCTGTGTAGCGCATATAAACGCCATACATCTCAAAAAGGCAGACAGCTGCGAGCTCTGCGGCAAAGTTGTTGCAGGCGGTTCTGGCCAGATGCGTATGCACATAGAACGAAATCATACGCACGGCAACTACACCTGTGATGTTTGTCAGCTAGAATTGAAGAATGTTTCACTTTATAACTTCAAATATCACAAAAGATGGCACAACGAAGATAAATTATGGCGGTGCGAGCTTTGCGGGAAAGCGTTTGTGACGCGCACACATCTGATGACGCACAAAGTAACACATACACGCCAGGGCGAGTTCCTTTGTACACGTTGTGGAAAGAgTATGCGCAGCAAATGGGAACTACGCACTCATCTCTATGCCATTCATGGCGAGGGGGAAGCGCCACTTAAATGCAACTACTGCGacgaaaAATTCACACAACACATACAAAAGCGAGCACATCTAGAGCGATGTCATCCAATTGAGTTGGCCAAACGCACCGTTCGCTGTCCGAAATGCAAAAAGCAATTCTCTACGGAGACCAATCTTCAAAAGCACCTGAAACAGCAGCATCAGCAAGATAATGCGGATACAACAAGAAAGTCGGAAGTAGTCGCCACTTCTCCACAGCCGTATGAAGGCTTTATGTGTGCACATTGTCCGCGTAAATATCGCTCCAAATATTCGCTCATAAAACATCTTAGGGTACATGTGACGAAGACAGATCGCCCATATTCATGTCGTGACTGCGATATGCATTTTAAGCACTTCTCAGAGTTGGATCGTCACGATTTGCAGCATCACGCTACTGTTCGTCCATATAGATGCGGTAAGTGCTCAAAGGCATTCTCGACAAGAACCGCGCTTAAAATTCACGGAAAAGTTCACGAGGTAAAGGGGAGAAACTTTCGTTGTCCGGAATGCAATCAACGTTTCAAATTTGAGAAATCATTGAATTTGCATCTCCTTTCGCACAAGTCAATGCGCCACAGCTGTGATATTTGCAATAAATCATACATACGATTAGCACAATTAAAAACCCATATAAACCGTTATCATAAAATATCGAGCGCTTCTGAAGAATAA
- Protein Sequence
- MGSSVYCRTCAAPPGNAAEAVIDIFANAKLIAILSTLKEWQLDIMQDDNLSQRICKTCELALIQIDAFRLQALRAKEHLHLSLHSLETMVGDAEAINDNENDLHTKTNCGEAEMYNRQAAPNTFPTISEFTAMHADDRVPNVINANKKGSKEQLIEFESGLNAANVQTGELSFDSNIESSRPPEFQVVLIEEEEETNLQWISEEDDAGEKGIDVPNSEISECSVHVREVEREIDTNNNSVGTAAGKSINFNRSTQRTNAKNVIEEGEKVCLSKNISFDLQKYVCRTTDYKIGKSRSKGKPCKDVQRHGAQKVIPNNGKDNQFTWVITETSREIAAPMSDKKGIVADYQSEIHEFETLLAAINDQVAAFESGKESNAYLSDDLQSVLMNELTLQMINANVNILEEDLQIDEFEMMLAAVDEQASTLGSINTPRQTAEIPDRQMVHKNGFNEEIDLDIPENQESILKEMEALKKEDFSALYEKSSATDTVDFSHSTSEAKIKIYNSSCVESKITDYAHYHFSPNKIKRIISDDNVSDVLCGVLNEPDYKKIYNGESLGKANTEFIKNNNNIQNAALGDREIEHSTTVVPRPNKKSSNGMRCRLCVYKVSEQPIFATKELLAEHIASIHDDKERPYNCPQCAARYRTRSGCVAHINAIHLKKADSCELCGKVVAGGSGQMRMHIERNHTHGNYTCDVCQLELKNVSLYNFKYHKRWHNEDKLWRCELCGKAFVTRTHLMTHKVTHTRQGEFLCTRCGKSMRSKWELRTHLYAIHGEGEAPLKCNYCDEKFTQHIQKRAHLERCHPIELAKRTVRCPKCKKQFSTETNLQKHLKQQHQQDNADTTRKSEVVATSPQPYEGFMCAHCPRKYRSKYSLIKHLRVHVTKTDRPYSCRDCDMHFKHFSELDRHDLQHHATVRPYRCGKCSKAFSTRTALKIHGKVHEVKGRNFRCPECNQRFKFEKSLNLHLLSHKSMRHSCDICNKSYIRLAQLKTHINRYHKISSASEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00081567;
- 90% Identity
- iTF_00081567; iTF_00083319;
- 80% Identity
- -