Afra033340.1
Basic Information
- Insect
- Anastrepha fraterculus
- Gene Symbol
- -
- Assembly
- GCA_037575425.1
- Location
- JAYXIM010045293.1:240831-244118[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.47 65 5.6 0.3 1 23 636 659 636 659 0.93 2 10 3.2e-05 0.0044 18.7 1.3 2 23 724 745 723 745 0.96 3 10 0.0077 1.1 11.2 0.5 1 23 751 774 751 774 0.89 4 10 0.024 3.3 9.6 5.1 2 23 782 804 781 804 0.95 5 10 7.7e-06 0.0011 20.6 2.3 2 23 814 836 813 836 0.95 6 10 1.3e-05 0.0019 19.8 2.9 1 23 860 882 860 882 0.98 7 10 0.075 10 8.1 5.4 1 19 890 908 890 913 0.93 8 10 1.9e-05 0.0026 19.4 0.7 1 23 919 941 919 941 0.98 9 10 6e-05 0.0083 17.8 1.4 1 23 948 970 948 970 0.98 10 10 1.6e-05 0.0023 19.6 1.8 1 23 975 998 975 998 0.96
Sequence Information
- Coding Sequence
- ATGGGTAGCAGCGTGTACTGTCGCACCTGTGCAGCACCTCCTGGGAACGCAGCCGAAGCAGTGATCGACATTTTCGCAAACGCTAAATTAATTGCGATTTTAAGTACGCTAAAGGAGTGGCAATTAGATATTATGCAGGATGATAATTTATCTCAGCGTATTTGTAAGACGTGCGAATTGGCGCTAATACAGATAGACGCATTTCGGTTACAAGCTTTGAGAGCAAAACAGCATCTTCATTTGAGTTTGCACTCATTGGAGACGATGGTGGGGGATGCTGAAGCAATCAACGACAATGAAAATGACCTTCATACTAAAACAAATTGTGGTGAAGCGGAGATGTACAACAGGCAAGCCGCACCGAACACATTTCCAACAATATCCGAGTTTACTGCTATGCATGCGGATGATAGAGTGCCGAATGTTATAAATGCAAATAAGAAAGGGAGCAAAGAACAATTAATTGAGTTTGAATCAGGTTTAATTGCAGCCAATGTACAAACCGGTGAGTTATCGTTTGATTCGAATATTGAGTCTAGCAGACCACCCGAATTTCAGGTAGTACTAATTGAGGAGGAGGAGGAGACAAATTTGCAATGGATAAGTGAAGAAGATGATGCTGGAGAGAAGGGGATTGATGTACCAAATAGTGAAATTTCAGAGTGCAGTGTGCATGTGCGAGAGGTTGAGCGTGAAATTGACACCAATAACAACTCAGTAGGGACTGCCGCGGGCAAGtctataaattttaatagatcAACGCAGCGCACAAATGCAAAAAACGTTATAGAAGAGGGCGAGAAAGTCTGTTTAAGCAAGaacatttcatttgatttacaaaaatacgTATGCCGAACAACTGACTACAAAAtcggaaaaatcgaaaaaagtggATCAAAAGGAAAGCCTTGTAAGGATGCTCAAAGGCATGGTGCGCAAAAAGTCATACCAAACAACGGAAAAGACAACCAATTTACATGGGTCATTACAGAAACATCAAGAGAAATTGCTGCTCCTATGTCCGATAAAAAAGGAATCGTGGCAGATTACCAATCTGAAATACATGAATTTGAAACGTTGTTAGCTGCAATAAACGATCAAGTCGCTGCCTTTGAATCAGGTAAAGAGTCAAATGCGTATTTGTCTGATGACTTACAATCGGTGCTTATGAATGAGTTAACACTGCAGATGATcaatgcaaatgtaaatattcTGGAAGAAGACTTACAAATTGATGAGTTTGAAACGATGCTGGCAGCAGTTGATGAGCAGGCCTCCACATTGGGATCTATAAATACGCCAAGACAGACAGCAGAGATACCTGACCGACGGATGGTgcataaaaatggttttaacGAAGAAATAGATCTAGATATTCCAGAAAATCAAGAGAGTATACTAAAAGAAATGGAAGCCCTAAAAAAAGAGGATTTTTCAGCTTTATATGAGCAGAGTAGCGCAACAGACACTGTAAATTTTTCTCATTCTACTAGcgaagctaaaataaaaatatataattcttCGTGCGTTGAGTCTAAAATTACAGATTATGCCCATTATCACTTTTCGCCAAATAAGATTAAACGCATAATAAGTGATGATAATGTTTCAGATGTTTTATGCGGTGTATTAAATGAACCTGATTACAAAAAGATATATAATGGGGAATCGCTTGGCAAAGCTAATACtgagtttatcaaaaataataataacattcaaAATGCAGCTCTTGGGGATAGAGAAATCGAGCATTCAACTACAGTGGTTTCACGTCCAAATAAAAAGTCTTCGAATGGCATGCGATGCCGTCTGTGCGTGTACAAGGTGTCGGAGCAGCCGATTTTCGCAACGAAAGAGCTCCTGGCCGAGCACATAGCTTCGATACATGATGACAAGGAGCGGCCATATAATTGCCCTCAATGTGCGGCACGGTATCGTACACGGAGTGGCTGTGTAGCGCATATAAACGCCATACATCTCAAAAAGGCAGACAGCTGCGAGCTCTGCGGCAAAGTTGTTGCAGGCGGTTCTGGCCAGATGCGTATGCACATAGAACGAAATCATACGCACGGCAACTACACCTGTGATGTTTGTCAGCTAGAATTGAAGAATGTTTCACTTTATAACTTCAAATATCACAAAAGATGGCACAATGAAGATAAATTATGGCGATGCGAGCTTTGCGGGAAAGCGTTTGTGACGCGCACACATCTGATGACGCACAAAGTAACACATACACGCCAGGGCGAGTTCCTTTGTACACGTTGTGGAAAGAgTATGCGCAGCAAATGGGAACTACGCACTCATCTCTATGCCATTCACGGCGAGGGGGAAGCGCCACTTAAATGCAACTACTGCGatgaaaAATTCACACAACACATACAAAAGCGAGCACATCTAGAGCGATGTCATCCCATTGAGTTGGCCAAACGCACCGTTCGCTGTCCGAAATGCAAAAAGCAATTCTCTACGGAGACCAATCTTCAAAAGCACCTGAAACAGCAGCATCAGCAAGATAATGCGGATACAACAAGAAAGTCGGAAGTAGTCGCCACTTCTCCACAGCCGTATGAAGGCTTTATGTGTGCACATTGTCCGCGTAAATATCGCTCCAAATATTCGCTCATAAAACATCTTAGGGTACATGTGACGAAGACAGATCGCCCATATTCATGTCGTGACTGCGATATGCATTTTAAGCACTTCTCAGAGTTGGATCGTCACGATTTGCAACATCACGCTACTGTTCGTCCATATAGATGCGGTAAGTGCTCAAAGGCATTCTCGACAAGAACCGCGCTTAAAATTCACGGAAAAGTTCACGAGGTAAAGGGGAGAAACTTTCGTTGTCCGGAATGCAATCAACGTTTCAAATTTGAGAAATCATTGAATTTGCATCTCCTTTCGCACAAGTCAATGCGTCACAGCTGTGATATTTGCAATAAATCATACATACGATTAGCACAATTAAAAACCCATATAAACCGTTATCATAAAATAACGAGCGCTTCTGAAGAATAA
- Protein Sequence
- MGSSVYCRTCAAPPGNAAEAVIDIFANAKLIAILSTLKEWQLDIMQDDNLSQRICKTCELALIQIDAFRLQALRAKQHLHLSLHSLETMVGDAEAINDNENDLHTKTNCGEAEMYNRQAAPNTFPTISEFTAMHADDRVPNVINANKKGSKEQLIEFESGLIAANVQTGELSFDSNIESSRPPEFQVVLIEEEEETNLQWISEEDDAGEKGIDVPNSEISECSVHVREVEREIDTNNNSVGTAAGKSINFNRSTQRTNAKNVIEEGEKVCLSKNISFDLQKYVCRTTDYKIGKIEKSGSKGKPCKDAQRHGAQKVIPNNGKDNQFTWVITETSREIAAPMSDKKGIVADYQSEIHEFETLLAAINDQVAAFESGKESNAYLSDDLQSVLMNELTLQMINANVNILEEDLQIDEFETMLAAVDEQASTLGSINTPRQTAEIPDRRMVHKNGFNEEIDLDIPENQESILKEMEALKKEDFSALYEQSSATDTVNFSHSTSEAKIKIYNSSCVESKITDYAHYHFSPNKIKRIISDDNVSDVLCGVLNEPDYKKIYNGESLGKANTEFIKNNNNIQNAALGDREIEHSTTVVSRPNKKSSNGMRCRLCVYKVSEQPIFATKELLAEHIASIHDDKERPYNCPQCAARYRTRSGCVAHINAIHLKKADSCELCGKVVAGGSGQMRMHIERNHTHGNYTCDVCQLELKNVSLYNFKYHKRWHNEDKLWRCELCGKAFVTRTHLMTHKVTHTRQGEFLCTRCGKSMRSKWELRTHLYAIHGEGEAPLKCNYCDEKFTQHIQKRAHLERCHPIELAKRTVRCPKCKKQFSTETNLQKHLKQQHQQDNADTTRKSEVVATSPQPYEGFMCAHCPRKYRSKYSLIKHLRVHVTKTDRPYSCRDCDMHFKHFSELDRHDLQHHATVRPYRCGKCSKAFSTRTALKIHGKVHEVKGRNFRCPECNQRFKFEKSLNLHLLSHKSMRHSCDICNKSYIRLAQLKTHINRYHKITSASEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00083319; iTF_00082372;
- 90% Identity
- iTF_00082372;
- 80% Identity
- -