Alud012665.1
Basic Information
- Insect
- Anastrepha ludens
- Gene Symbol
- -
- Assembly
- GCA_028408465.1
- Location
- JAPVRI010051727.1:243-2035[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0007 0.12 14.3 5.3 1 23 242 265 242 265 0.98 2 8 5.1e-06 0.00086 21.1 0.4 3 23 270 290 268 290 0.96 3 8 0.0002 0.033 16.0 4.6 1 21 294 314 294 317 0.95 4 8 8.9e-05 0.015 17.1 0.2 2 23 324 345 323 345 0.95 5 8 1e-06 0.00017 23.3 3.6 1 23 351 373 351 373 0.98 6 8 6.5e-06 0.0011 20.7 0.1 1 23 377 399 377 399 0.98 7 8 1.9e-05 0.0031 19.3 1.8 1 23 405 427 405 427 0.96 8 8 0.5 85 5.3 3.9 1 12 433 444 433 456 0.83
Sequence Information
- Coding Sequence
- ATGGACTTCACAGCTGTGGAATGGAAAAGTTGGTGTCGCCTGTGTGCTAGAGCTGATACACAATATATCAATGTCATTTCCGGACAGTGTCAGCAACTTGTGCCAAAAACTAATGAAtacagtagtagtagtagttgtAGTATTGCCCCTGTCATAGAGGATTTCTTTCGGATTCACATTAAAGAGGATGAAAAACTCTCGCAGCTGGTTTGTATAGAATGTTACCAACTGGTAAAATCCTTGATAAGGTTTAGAGAGCGAGTAAATAAAGTTCAGCAAATGTACGACGATCTACAAAATCATGTACACATAGGCAAACTTAACTCAAAagctttgtttgaaaaatatgacTTAATTGAAAATGCACCATTTTTTCCACCTAATGACAGTAAACTGCCTgttgaagaaattttcattgCTGATTTGCCTGTCACAACTATATCACAATCATCAGGAATTGATgtaaaaagtgaaaagaaatcggATGAAGTGCAAACGGATATATTTTTACAAGAGTACACAAAGAAGGGAGAATTTATTGATCCGATCGGTGATGAAAAAGGTAGTTCTGACAAAGATTATTCTCCGATAGCCCAAGACGAAGATACTAGCGATAATGAAGATAGTGACATAGATTTAGAGTCTAAAAATAACGATTCGGAAAAGGTTACACAAAAATCAGAGGACTCCTCGAATGTACACAATCAGGACCTGGAATGTAGCTATTATTGCAAAATTTGCTCTCAAAGTTTTCAACGTATCAGGCACTATACTCTTCATATGAAAACGAGACATGGAGACATAATATGTCCCCAGTGTccgaaatcattcaaaaatgcattaaaattaagGCAACATATGAAAGACCACCCAAGAACGTTTTCCTGCTTACATTGcgataaaaaattcgaaacaaaaGTAAGTTTAGCAAAACATataagatgtacgcatgaagaTGAGCAACCACTTATTTGTGAAGTATGTGGGGTGACTTTACGCACGAAAAAACAACTCAGAGAACATATGTTGCAACACACTGATTATTCGCCATTTGAATGCAAAGTTTGCGGTACTTGTTTCAAAGTAAAAAGTCGTCTGAAGagGCACATGCAAATACATGGAGACAAGTATATTTGCCCTGAATGTGGTAAACAACTGAGTACGCGAGCTACGCTCAAAAGTCATTTGTTGGTGCATTCCGATAAGATGTCACATAAATGTGACTATTGTGGCCGGTTGTTTAAACGCGCAAATACACTGAAAAACCACTTAATTGCCCACACGGATCTCAGACCTTATTCATGTGACTTTTGTGATAAACGGTTTTCAACTGGGCCTAGTTGTCGTTTTCACAAAAGAACAATGCATCCAAAGGAACTAGCTGAGCTAGGAGCGTCGGGTGCTAAAGCATATACCAAAAATATACCTACTTTGAACGTACTAAAGGCGGTGTCAAGGACAGGTACAAATTTCAAGCCTCTAGCATCAAAACAGAATGGTTTTGCACATTTCGACAAGGAAGTACAAATTAAACCTGAAGATGTGAACTCAAatccaacaaaatattataaatcagatttattatattttaaacattaa
- Protein Sequence
- MDFTAVEWKSWCRLCARADTQYINVISGQCQQLVPKTNEYSSSSSCSIAPVIEDFFRIHIKEDEKLSQLVCIECYQLVKSLIRFRERVNKVQQMYDDLQNHVHIGKLNSKALFEKYDLIENAPFFPPNDSKLPVEEIFIADLPVTTISQSSGIDVKSEKKSDEVQTDIFLQEYTKKGEFIDPIGDEKGSSDKDYSPIAQDEDTSDNEDSDIDLESKNNDSEKVTQKSEDSSNVHNQDLECSYYCKICSQSFQRIRHYTLHMKTRHGDIICPQCPKSFKNALKLRQHMKDHPRTFSCLHCDKKFETKVSLAKHIRCTHEDEQPLICEVCGVTLRTKKQLREHMLQHTDYSPFECKVCGTCFKVKSRLKRHMQIHGDKYICPECGKQLSTRATLKSHLLVHSDKMSHKCDYCGRLFKRANTLKNHLIAHTDLRPYSCDFCDKRFSTGPSCRFHKRTMHPKELAELGASGAKAYTKNIPTLNVLKAVSRTGTNFKPLASKQNGFAHFDKEVQIKPEDVNSNPTKYYKSDLLYFKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00083311;
- 90% Identity
- iTF_00081544;
- 80% Identity
- -