Basic Information

Insect: Anastrepha ludens
Gene Symbol: -
Assembly: GCA_028408465.1
Location: JAPVRI010004987.1:1-6362[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.72 1.2e+02 4.8 0.1 1 17 80 96 80 97 0.87

2 12 0.22 37 6.5 1.4 1 21 202 222 202 223 0.91

3 12 1.8e-05 0.0031 19.3 1.3 1 23 268 290 268 290 0.98

4 12 8e-07 0.00014 23.6 1.8 2 23 311 332 310 332 0.97

5 12 0.012 2 10.5 0.8 1 23 358 379 358 379 0.90

6 12 7.8e-05 0.013 17.3 1.0 1 23 385 407 385 407 0.99

7 12 0.00019 0.032 16.1 0.8 1 23 434 456 434 456 0.97

8 12 6.6e-07 0.00011 23.8 1.4 1 23 462 484 462 484 0.96

9 12 0.00021 0.035 16.0 2.2 1 23 490 512 490 512 0.98

10 12 1.3e-06 0.00023 22.9 0.9 1 23 518 540 518 540 0.99

11 12 8.4e-06 0.0014 20.4 0.1 1 23 544 566 544 566 0.98

12 12 0.00072 0.12 14.3 0.1 1 23 578 601 578 601 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.72	1.2e+02	4.8	0.1	1	17	80	96	80	97	0.87
2	12	0.22	37	6.5	1.4	1	21	202	222	202	223	0.91
3	12	1.8e-05	0.0031	19.3	1.3	1	23	268	290	268	290	0.98
4	12	8e-07	0.00014	23.6	1.8	2	23	311	332	310	332	0.97
5	12	0.012	2	10.5	0.8	1	23	358	379	358	379	0.90
6	12	7.8e-05	0.013	17.3	1.0	1	23	385	407	385	407	0.99
7	12	0.00019	0.032	16.1	0.8	1	23	434	456	434	456	0.97
8	12	6.6e-07	0.00011	23.8	1.4	1	23	462	484	462	484	0.96
9	12	0.00021	0.035	16.0	2.2	1	23	490	512	490	512	0.98
10	12	1.3e-06	0.00023	22.9	0.9	1	23	518	540	518	540	0.99
11	12	8.4e-06	0.0014	20.4	0.1	1	23	544	566	544	566	0.98
12	12	0.00072	0.12	14.3	0.1	1	23	578	601	578	601	0.96

Sequence Information

Coding Sequence: AGTGCCTACgtgaaaatggaaaattataCACAAGTTGATGATTATGGTGGCGACATATTGGTGAAAAACGAGTACCTTGAGTATAATGAATCCATTGAGACCGGATATGAAAATGAATCGTTGATTGAATATGTTGAAGAAGAGGAGGTGCAAAATTACGACTATGTCGAAGGTCATGCGAAAACGCACACACTCACAATAAAAGCCATGCTAATAGACGGACTACATCAAAAAGTGTATCGTTGTTTAGAATGTGATATAGATTTTGCTACAATTGAAGACTTTACCAAGGTCCATCAAGAAATGCAAACAAAGCGTCGTCTTTACCAAGCAACTGACCAAGTGGCTGATACCGAATCATTTCAGAGCGAAAATTTAAGCAATGAACAACCCATTCTTGCGCACGAAGGTGAAGACTGGATAATTGTAAAAGAAGAACCAATTGATACTAATGATAATGGAGAAAAGTATATAGAAGTTACTGAGAATATTGCAGAAAGTGTGGAGATTACTGAGGGCATCGGCGAATTGCTTTCAGAAACAGATTTACGTTACGAAGATATGGCACAAGAGATAGCCGAAGATGAGGATGATGGTGAAAAGTATTTTTGCTGTGATTGTCAAGTTGTATTTAGTGATTTGGAAAGTGCGGAGCAGCACGTTTGCAGCGCACTTAACACCGCTACATTGGATGCAGATTCAGCAGGAGGCAGTATTGCAGAGCAAAAACGTGATGATAACATAGATTATGAAGAGCAGAGCGAGACTTCAACAAACAAAATAGCTAGTAGTGATGCAAAGTACCATTGCCTGGAgtgtggaaaaaattttaattctctaCAAGGTTTACAAATACACCTTCGCAGTCATAAAACCAAACAAAGAAAGACAAAGAGCAACGTGCAAGAGGTAAAGGAGTTAAAAAGCACGACATGCCCAATATGTAATACCACATTCAGATCGTATAAAAATCTTaaGTTGCACATGAAAATGCATGATGCACAACAGATGCGTACTATTGAAGAAGCATTACCCGCTGGTGCCAAAGGGCAATACAATGACATGAATAAGTTCTTTTGTGAAATTTGCAATAAGAGctttgaacaaaatttacttggtatacataaaaatatgcacCAACAGGCGACTGAGTACAAGTGCGGTATCTGCAATCGGGACTTTGAGAATAAAACTAGCTACGATATGCATATGCAAATGCACGCTGAAAGACCGGTGAAACCTCGTAAACAACAATTCAAAGCAGCTAATACCACTGGCAACGATAAGCGTGATGGTCGCTTTGCATGTCAATATTGCGGGCGAACCTTCCAGCGGCCATTCGAAAAAGTACGTCACGAGCGCGTGCACACTGGCGAGAAACCACACGCGTGTGAAGTGTGTGGCAAAACCTTTCGTGTATCTTATTCACTTACGCTGCATCTACGCACACACACCGATATTCGACCATTTGTGTGTGCAACTTGCAATAAGCGTTTCAAATCACAACCGGTATATGCGCATCACCTTCGCACTCACGAATCGGAGCGCGCCTACAAATGTGAAACGTGTTCGAAAACGTTTCGCACGTCGGTCCAACTTGCTGCGCATCGAAatattcattctaaaccatacAATTGCCCTGTATGCAATCGTCCCTTTGCTTCATTGTACGCTGTGAAAATACACATGAAAACGCATAATAAGCAAACCCGCTCCGGCGATGCTACTAAATATAGTTGCTATGTATGTGGCGCGGAATATGCGCGCATCTCTGCATTACGTTTGCATATGAAAGATTTTCACTTTATCGATTTTGATACGAATCAGTCGTTAGAGTTAGACGATGAAGTGATTTCGGCCGATGAACAAAATGCACAAGAAAACGAAGATGAACATGAGGTGGATCACGAGGCTGCTGTGTTGATAGCAGCGGCTGCAGAAGCCGACTGTGCGGCTTACATGGAAACTGTAACAGCTCAAGCTCCAGATGTATACGAGGTGGCGCAACAAAATGACGAGCTGATTGTGGACAACTACCAAACAGAGGAGATTGTGTCTGATTGGCTATCGAAGTAA
Protein Sequence: SAYVKMENYTQVDDYGGDILVKNEYLEYNESIETGYENESLIEYVEEEEVQNYDYVEGHAKTHTLTIKAMLIDGLHQKVYRCLECDIDFATIEDFTKVHQEMQTKRRLYQATDQVADTESFQSENLSNEQPILAHEGEDWIIVKEEPIDTNDNGEKYIEVTENIAESVEITEGIGELLSETDLRYEDMAQEIAEDEDDGEKYFCCDCQVVFSDLESAEQHVCSALNTATLDADSAGGSIAEQKRDDNIDYEEQSETSTNKIASSDAKYHCLECGKNFNSLQGLQIHLRSHKTKQRKTKSNVQEVKELKSTTCPICNTTFRSYKNLKLHMKMHDAQQMRTIEEALPAGAKGQYNDMNKFFCEICNKSFEQNLLGIHKNMHQQATEYKCGICNRDFENKTSYDMHMQMHAERPVKPRKQQFKAANTTGNDKRDGRFACQYCGRTFQRPFEKVRHERVHTGEKPHACEVCGKTFRVSYSLTLHLRTHTDIRPFVCATCNKRFKSQPVYAHHLRTHESERAYKCETCSKTFRTSVQLAAHRNIHSKPYNCPVCNRPFASLYAVKIHMKTHNKQTRSGDATKYSCYVCGAEYARISALRLHMKDFHFIDFDTNQSLELDDEVISADEQNAQENEDEHEVDHEAAVLIAAAAEADCAAYMETVTAQAPDVYEVAQQNDELIVDNYQTEEIVSDWLSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00081509; iTF_00083256;
90% Identity: iTF_00081509; iTF_00083256;
80% Identity: -