Afra033590.1
Basic Information
- Insect
- Anastrepha fraterculus
- Gene Symbol
- -
- Assembly
- GCA_037575425.1
- Location
- JAYXIM010045725.1:49034-51717[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.063 8.7 8.3 2.9 1 23 126 149 126 150 0.94 2 13 0.013 1.7 10.5 0.6 2 23 155 177 154 177 0.90 3 13 3.4e-06 0.00047 21.7 5.4 2 23 187 209 186 210 0.96 4 13 0.0003 0.041 15.6 9.0 2 23 421 442 421 442 0.98 5 13 2.1e-06 0.00029 22.4 3.5 1 23 447 470 447 470 0.94 6 13 0.0034 0.47 12.3 0.5 1 23 475 498 475 498 0.93 7 13 0.021 2.9 9.8 6.9 1 23 508 530 508 530 0.96 8 13 0.056 7.8 8.4 3.0 1 23 535 557 535 558 0.94 9 13 3.1e-05 0.0042 18.7 0.9 1 23 564 586 564 586 0.95 10 13 7.9e-06 0.0011 20.6 0.8 1 23 592 614 592 614 0.98 11 13 4.4e-06 0.00061 21.4 3.5 3 23 622 642 621 642 0.99 12 13 7e-07 9.7e-05 23.9 0.3 1 23 648 670 648 670 0.99 13 13 0.0069 0.95 11.3 0.2 1 23 675 698 675 698 0.93
Sequence Information
- Coding Sequence
- ATGGAAACCATTAGTTCAGGAGCCGATGTCCCGAACTCTGACCGCATTTGCCGAGTTTGCTTGCAAGGAAATGTTGAACTGTTTTCTATCTTCCAAGAAACTCATATCAGTGGGGTAACGGTAGCACATATCTTATCAGAATGCACGAGATATCCTGTAATAGCGGCCGATCTTAAATTACCGCAACAAATCTGCACTTGTTGTATTGGAAACGCCCGTGTTGCCTATGAATTCAAACAGCGTGTAGAACAGTCTTACAATTCATTAATGGGGTGGGCAGAAGAGAAATTCCAGTGTAATACAAAAGTTGAGTCGCCAGTCGTCACTCCCAGTGAGCGAAGGGAATATGGTACACAGACTGATATACTCAGTTTACATCCATGTGAAATGTGCGAAATGaagttttttgatttattggaGCTCCGGCAGCACCGCAAGCAAATTCATCATAATAGTAGTTTGCAGTGTCGAATCTGTGGTATACGCTTCGAACGCATGAGGCGATTGCGAAGCCATTTGGTCCAAAAACACCCAAGTGTTGGTATTGCATTGGATATTCAGTGCACAATATGCCGCAGACGCTTTTCACGCAGGGAACATTTAAATCGTCACATGCGTAACGTACACCATCAACCCGAGGCGACAAGCACTAGGGTCTCTCTCAAGGAACCAGAAATCGAgcttacaagccatttagtcaAAAAAGGGCAGCaatctacaaaaaaagaaaatgaggcGAAAATGGACGTGCCAGGAATTGACTTGAAGTCGGAGAAGAAATTGAGCACTGTAGACAACGACAGCTTTCTAGGACCTTCTCATTTTCTTGAATGTGGGCAGGATATGGCTGGGGAGGTTGAAAGCGACGTTAACATGGATACTAATCCTATTTCGAGCGATGATGAAGCCTACGATGGAATGGAAATTCCGGATGACATATTACCTAAGTTAAAATTAGAGCACGAGCCTGATATTaaggTTAAGTGCGAAGTCGACGTTTCTGTGGATGGTTTCGATATAACAATCATGTCGCCCGATTGGGACCAAAGTAAATCGCCAGCTTCTAATAATGTCATTAAAGAAGAACGTGAATTGTTGGTTCCTTTGAGCATACAAAAGTCATCTGCCTTTAAGGGGAAATCGTTCACAAATGGAAGGGAGGAGGAGGAAGACGCTGCAGAACGTCGGCGTATTACCGAAGTTGTTGATGAGTTTCTCGCCCAGAATTCTGCAGTTGATGAAACAGCTAATGCAGAAAACCGTTGCACAAAGTGTCAACGAACTTTTTCAAGACATTGTTATCTACGACGTCACATGTTGACACATGTTGAAAAGGGACATGCATGCACGTACTGCCCGAAACGTTTCGCACGAagtgatcatttaaaaaaacacattatgAACTTGCATCAAACGAAGGAATTCAAATGTGATCAATGTAGTAGTGCATTCGCGCGTTTAGTAGAATTAACAAAACACAAAGTCTCTCAACATGGAAGCGATCCCCAAGCGCATAAGGTGCACGATTGCGAGTATTGTTGCAAAAAGTTTACAAGTCGAACATATCTTCGCAAACATGTTTTAATGCATACTGATCGTATTTTCGCCTGCAAGTTTTGCGATGATACATTTAAAGAACGGAAAACTCTCCGTGAACATGAGAAGGGTCATCACAGTGACCGAAAGAATTTCCTATGTTCAGTTTGCGGAGAAAGTTTCGTAAGAAACGATTATCTACGTTTCCATATGCGTCGTCATAATGGCGAAAAGCCATACAAATGCCAATATTGTGGAAAAGGCTTTCCACGCTCAACTGATGTTAAAATACACGAAAGGTATCACACAGGCACTAAACCTAACTTGTGCAATCTATGTGGCAAGGGTTTCCATCGCGCCTATCACCTCACCATTCATATGCGCACTCATACCGGCGAGCGACCTTTTAAATGTGAAGAGTGCGGACGAGGATTTGCCCAAAGCAACGATTTGAAAGGTCATATTCGGCGGCACACTGGTGAACGTTTCAAATGTTCTGAATGTGATGCCggtttttttaaaatgtatgcacTGCGACAACATGCACAGGCGATACATGGCATACATATGGAACCGGCAACAGGGCGTTTACAAAGATTTGCCCCTTCCGAAACTGCTGTAGCGGTTGGAGAAACACTTAAACCAACAAACAATATACATCAGCCTTTGGCAGAACATATGCAATTGATGCAGCAGCAACATCAACCACAGAATTTTTCAGAACCACAAATTTCAAATAGTACACTAATGCCGCCGCCACCTTCGTCAGTGTAA
- Protein Sequence
- METISSGADVPNSDRICRVCLQGNVELFSIFQETHISGVTVAHILSECTRYPVIAADLKLPQQICTCCIGNARVAYEFKQRVEQSYNSLMGWAEEKFQCNTKVESPVVTPSERREYGTQTDILSLHPCEMCEMKFFDLLELRQHRKQIHHNSSLQCRICGIRFERMRRLRSHLVQKHPSVGIALDIQCTICRRRFSRREHLNRHMRNVHHQPEATSTRVSLKEPEIELTSHLVKKGQQSTKKENEAKMDVPGIDLKSEKKLSTVDNDSFLGPSHFLECGQDMAGEVESDVNMDTNPISSDDEAYDGMEIPDDILPKLKLEHEPDIKVKCEVDVSVDGFDITIMSPDWDQSKSPASNNVIKEERELLVPLSIQKSSAFKGKSFTNGREEEEDAAERRRITEVVDEFLAQNSAVDETANAENRCTKCQRTFSRHCYLRRHMLTHVEKGHACTYCPKRFARSDHLKKHIMNLHQTKEFKCDQCSSAFARLVELTKHKVSQHGSDPQAHKVHDCEYCCKKFTSRTYLRKHVLMHTDRIFACKFCDDTFKERKTLREHEKGHHSDRKNFLCSVCGESFVRNDYLRFHMRRHNGEKPYKCQYCGKGFPRSTDVKIHERYHTGTKPNLCNLCGKGFHRAYHLTIHMRTHTGERPFKCEECGRGFAQSNDLKGHIRRHTGERFKCSECDAGFFKMYALRQHAQAIHGIHMEPATGRLQRFAPSETAVAVGETLKPTNNIHQPLAEHMQLMQQQHQPQNFSEPQISNSTLMPPPPSSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00081507; iTF_00082315; iTF_00082316; iTF_00083251;
- 90% Identity
- iTF_00082315; iTF_00081507; iTF_00082316; iTF_00083251;
- 80% Identity
- -