Basic Information

Gene Symbol
zfpm1
Assembly
GCA_963576865.1
Location
OY756399.1:18560286-18576457[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 5.1 5.3e+02 2.5 0.3 2 23 6 27 5 27 0.95
2 13 0.28 29 6.5 0.1 2 23 1007 1029 1006 1029 0.89
3 13 1.9e-05 0.0019 19.6 1.7 2 23 1150 1171 1149 1171 0.97
4 13 0.00016 0.017 16.6 2.1 1 23 1177 1199 1177 1199 0.98
5 13 0.0089 0.93 11.2 2.5 2 23 1206 1227 1205 1228 0.95
6 13 3.5 3.6e+02 3.0 1.2 5 23 1241 1259 1239 1259 0.96
7 13 0.016 1.7 10.4 0.7 3 23 1266 1287 1265 1287 0.96
8 13 0.023 2.3 9.9 0.1 2 23 1303 1323 1302 1323 0.96
9 13 0.0021 0.22 13.1 0.9 3 20 1331 1348 1329 1351 0.85
10 13 0.0084 0.87 11.3 0.8 1 23 1359 1381 1359 1381 0.98
11 13 0.0063 0.65 11.7 7.2 1 23 1387 1409 1387 1409 0.98
12 13 7.3e-06 0.00076 20.9 1.3 1 23 1415 1439 1415 1439 0.98
13 13 0.00073 0.076 14.6 5.5 1 23 1445 1467 1445 1468 0.96

Sequence Information

Coding Sequence
ATGGATCAACTGGTGCAGTGCCCCGTGTGCACCTTGTACCTCCACAATGGGATGACCTTAGAGTCTCATCTTGATACCCATCCAAAAGACCAGGTAATAAAAGCATTGTGCAGCCTAACAACAAAGGGCAGTAGTAGTTATGGAAGTAGAACATCAACACCCTTGCATTCTGAACGCTCATACAGAAGCCGGTCTCGGACCCCGGCTGCAGATGACAGATGGCCCAGTTCTCATAGAAGTAGTGAAACTGACAGATACTGGCGCAGAACTCCTAGCCGAACATCCAAATCGAGTCAGATGTTAAATTCTTCTCGCAATGGAACACCAGATATTAGAATGGGTGATATTACCTTTGATAACAACCTTAGCAGTGCAAGTCAGTTTTCAGGGTCTGCATATCCTATTAAATCTGACAAAACCCAACAAACTTATCTAAATACACCGACAGGTGATTTTGAGCAGCCCTATGCATTTTACCAGGATTCAAATGAAGATAGAGAAATTAAATATTCTCGCAGCGCAGAATATAATCCATTAGATGCAACCAGTACAGTTTTCACTCATAACACTCCTACTGCAACTACCAATGTAAAATTACAGCCAACCTTGCTTCCTGCACTGCCTCGTAGAGGTAATGAAAATATAGTAAAAGTGTTACCAAAACCAAATATACTTGTAAAGACTAATGTGGGTGGGGTGCAGTATATCACTCCGGGTGTGAAGCCGATGCATGTAATGGTGCCTACAGCCCCAACATTTGTCCAAAAGAATGTACAAAGCAATATGATTATGACTAGTAGGATGCCTGGAACAACAATGGTCGAGTCAAAGAATTTGGCACCCACAGTACCTGCAAACCAGTTCAATCAAATGACCAGCAGTACTTTCACACCTGGTACAACTGTAGTACAAAATTCTCAAATAATTTATAGAGAAATGGTTCATAATATTGATGGTAAGCGTTTTATTTCTTGTGTGCCTTCTGTACTTAGTCATGAGAATGTTACTAATGTTGCACAGGGGTCTTCAGTGTATCAGAATCTGATGGTTGTAGACCAACTTGGAAATACACCTTGTATGTACACTACACCTCAGTCTATAATACCAAAGTCTTGCACCACATCCATATACTCTGATAATATGTCTCATGTGCCTAGCAGTACATTACATGTTGACAAGGCTGGGTCTTCATCAGCTGACCCCAATAAGACTCTAATAATAGAAGTAGGGCCTATTGTTGCCCCCACAACACAGCCAGATGTAGCTACAACTAATTCAATTACTACACAAACTGATATAGATGTTTCCAAACCTAACAAAGTCGAGGCGAGAGAGCCTCGATTAGATAAATGTGAAACACCAGGATCTAGCAAAGGTTTGAAAATCCTTAGCAATATTAAAGTGGAAGTTCCAGTTCAGCACCACAAAAATATGCTGAACATAGTTATGGATTTAACTGGGGGTAACGAACCTGAGTATCCGGATAGGTCTGAGACACCAGAGAAAATCCTGCCTGATTTGGATGATAATAACCAGATGTCGGACGATTGTACTCAACCATCAATATCTAGCAGTGATAGTGTAGTCTCACATACATTTTCTGTGATAAAAAATGTTGGGAACCCACCCTCTTATAAAGATTCCTCTACCAAATCAAGTGTTTTGGACAGTAAAATTGATACTGAGTTTTCTGATAGCTGTCCAGTCCCAGATTTAATATGTAATGAGAAACCATCAATATCACCATGTAGTGAATTGTCAGAGAATGGAGAGAACTCGACAGATCGCACCTCAGTCTCTGCCTGCGCGTCGCCGAGGCCGCAAGCGAGCCAGCCAATTTGTATAGAGAGCAATATTGATAAGAAAGCCAATTCCACGCAAAAACCGTACAGGCACAACGCATTACGGTTAAACAACATTTACGTGAAAAAgcacaaaaaaatactacaaataaaaaacgCGAAGCCATGTCAGTCAAATGGTGAGTCAGACCACGCGGAAATCGAGCCACAAGCGTCATCGTCCTCATGTAAGTCGCCTGAAAATTATTCAATGAGCAAAATGAGTTCTGAGAGGAATGAGAGTTTTGATAAACTGAGCACTTTACAAACTATATCAGTGGAGAGGATTAATGAGGATAATGACCATGATAACCATGACTTTGATGCTGATATGGAGGAGCAGTCGATGGACATCGAGCCCGTAGCTCCCTCGAGTTTGAACAATTCAGATCAGTTTACGACCAGTGTCGACGTGGTGCAGGTCAAAGAGGAGGTGAATACAAGCAATGAATATAGTAACGAGAATAGTACTTCAAATCGCGAATTGGCGCCGTTAGAGACTCTTCGTCCGATAAACGTGATAACATACGGGAATATGCCTCCAGGGGAGTTCGATGACGAATCGAACCACAGGGAACTGTTGGAACTCGAGGCGGCATCTAAGAATAAGCAGTTCGTCAGCATGATGAACGAGAATTATTTCGGGGATAACATTTACGCGGATTATTTCACTCCGGATAGAGTGGAGTCTTTTGATGCGGTGCGGGAGTCGTGTTCGTACTCGAAAGACGGTCCAAAAGACGGTATATACGTTTGGGGGGAGTCGTCGCAAAAAGAAAGCGAGTTCGTACTGCCAAACTTTATACACGAGAGTTATAAGATAGCGGATAGTAGTGGGGTCGATTACACGGAGATCGGTAACAGAGAGGGACATGTGGATGGGGAGGTGTGCGAGAGGGACAGCAAGGCGGATGTGCTAAGCGAAGGCCGTAGCCCGGAGGTGCCGCTGAACATCTGCGCGGACGAGCGCATGCCGCCGCGAGGCGAGCTGAGCGGACAGGAGAGCAATGGAGACATGGAGTCGCCGTGGAGTGGGATGTACACAGACGTCCCGCCAGCGGAGCCCTACGACCTGATCGCGAGGGAGAGCTGGGTCTCCGACGGCTCCGAGATGGATACAAACGAGAAACGGGACAATTTAGAGGAAGAGCTCCACTTCCCCAAAGGTCGGGTCTCGTCGTGCACGACGTGCGGCGGCAAGTTCCCCTCTCTGCGCGAGATGCGCGCGCACAAGGCGGCCGCGCacgcgcccccgccgcccctcCACGCGCCCCCCCATCCGCCCCACGCGCCCCTCCACCCGCCCGCCACCTCCCGGACCTCGTACAGCAGGATGCTGACCGCCAAGATCATCAAGAAAGAAGAAAAGACCGAAGAGACAACTGTGATCGCCGGCAACATACTAACGACAATAGATTCCAAAGAGTCGATCACCACGACCATGCTGCAAGTGTACGACGTGATGAACGAAGCGAAGCCGAAGATCGAGGGGCTGATCAAGCAGGAGGCCAAGCCGCGCCGCAAAAGAGACTTCGTCTGCCCCACGTGTAAGGTTGACCAGCTGACGGACGTGGCGTTCCACGCTCACCTCAAGATCCACCCGCTGGAGTGTCTCACGTGCGGGAAATGCTTCTTTAGGAGGGCCAACTTGGCGCTGCACATCAAGACGCATCTAGggataaaaaattataaATGCGAAGTGTGCGAGAAGCGGTTCATCACGAAGCAGAAGCTGGTGGAGCACCACAACGTGCACACCGGCCGCGCGCCCGTCAAGTGCACCGTCTGCGATGACACCTTCCGCCGCTACTCCAACATGGTGCAGCACCGCGACCGGCACCACTTCCAGAAGAAGGCCAAGGTGCGCGACTTCGTGTGCCACTGCGGGGCCGTGCTGCACTCGCGCGCCAAGCTGCTGTGGCACCAGGAGACGCACGAGGCGCGGCCCAAGGCCTGCCTGTACTGCTCCGACAAGTTCGTGCACGCCGCCTCGCTCACGCGCCACGTGCGCCGCGCGCACAACGCCTGCTTCCTCTCCGACCGCGCCAAGCCCGACGAGAACGTGCCCTGCCCGGTCTGCAAGCAGATGTACCTGCGTGCCAACCTGCGCGCCCACCTCCTTACGCACAGCGGCAAGCGGCCCTACCTCTGCATCATCTGCAACAAGTCCTTCACCACCAAGTGGAACCTGAAGCTGCACCGCTGGACCCACATGTCACGATCCGCCAAGCCGTTCAAGTGCACCCTCTGCAAGGGCGCCTTCATCCGCCACGCCGAGTACGTCTCCCACATGAACGCGCACAAGTCAGTTCGCCCCTACACATGCAACTACTGCGGCTGCCAGTTCATCAGGAAGTATAACTGTCAACGGCACGTCAGGGAACACGAGATGGCCAAGAAGTACGTGTGCAAAGTTCCCGAGTGCGGTAAGTCGTTCCACAGAAGCTACTACCTCTCTGAGCATATGAAGGTGCATAGTGGGGCGAGACCGTTTTCCTGCAATATTTGCGGGAAAACTTCGAGTAACAAATCGAACCACAATAAACATCTGAAGATCCACCACGCCCGCGAACCGGTGGCGACGGAGGCGTAA
Protein Sequence
MDQLVQCPVCTLYLHNGMTLESHLDTHPKDQVIKALCSLTTKGSSSYGSRTSTPLHSERSYRSRSRTPAADDRWPSSHRSSETDRYWRRTPSRTSKSSQMLNSSRNGTPDIRMGDITFDNNLSSASQFSGSAYPIKSDKTQQTYLNTPTGDFEQPYAFYQDSNEDREIKYSRSAEYNPLDATSTVFTHNTPTATTNVKLQPTLLPALPRRGNENIVKVLPKPNILVKTNVGGVQYITPGVKPMHVMVPTAPTFVQKNVQSNMIMTSRMPGTTMVESKNLAPTVPANQFNQMTSSTFTPGTTVVQNSQIIYREMVHNIDGKRFISCVPSVLSHENVTNVAQGSSVYQNLMVVDQLGNTPCMYTTPQSIIPKSCTTSIYSDNMSHVPSSTLHVDKAGSSSADPNKTLIIEVGPIVAPTTQPDVATTNSITTQTDIDVSKPNKVEAREPRLDKCETPGSSKGLKILSNIKVEVPVQHHKNMLNIVMDLTGGNEPEYPDRSETPEKILPDLDDNNQMSDDCTQPSISSSDSVVSHTFSVIKNVGNPPSYKDSSTKSSVLDSKIDTEFSDSCPVPDLICNEKPSISPCSELSENGENSTDRTSVSACASPRPQASQPICIESNIDKKANSTQKPYRHNALRLNNIYVKKHKKILQIKNAKPCQSNGESDHAEIEPQASSSSCKSPENYSMSKMSSERNESFDKLSTLQTISVERINEDNDHDNHDFDADMEEQSMDIEPVAPSSLNNSDQFTTSVDVVQVKEEVNTSNEYSNENSTSNRELAPLETLRPINVITYGNMPPGEFDDESNHRELLELEAASKNKQFVSMMNENYFGDNIYADYFTPDRVESFDAVRESCSYSKDGPKDGIYVWGESSQKESEFVLPNFIHESYKIADSSGVDYTEIGNREGHVDGEVCERDSKADVLSEGRSPEVPLNICADERMPPRGELSGQESNGDMESPWSGMYTDVPPAEPYDLIARESWVSDGSEMDTNEKRDNLEEELHFPKGRVSSCTTCGGKFPSLREMRAHKAAAHAPPPPLHAPPHPPHAPLHPPATSRTSYSRMLTAKIIKKEEKTEETTVIAGNILTTIDSKESITTTMLQVYDVMNEAKPKIEGLIKQEAKPRRKRDFVCPTCKVDQLTDVAFHAHLKIHPLECLTCGKCFFRRANLALHIKTHLGIKNYKCEVCEKRFITKQKLVEHHNVHTGRAPVKCTVCDDTFRRYSNMVQHRDRHHFQKKAKVRDFVCHCGAVLHSRAKLLWHQETHEARPKACLYCSDKFVHAASLTRHVRRAHNACFLSDRAKPDENVPCPVCKQMYLRANLRAHLLTHSGKRPYLCIICNKSFTTKWNLKLHRWTHMSRSAKPFKCTLCKGAFIRHAEYVSHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHLKIHHAREPVATEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
iTF_00075881;
80% Identity
-