Basic Information

Gene Symbol
-
Assembly
GCA_950371115.1
Location
OX493352.1:6504433-6509991[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.35 34 6.2 1.6 1 23 103 125 103 125 0.94
2 31 0.022 2.1 10.0 0.3 2 23 153 175 152 175 0.92
3 31 0.97 93 4.8 4.8 2 23 196 218 195 218 0.94
4 31 0.34 33 6.2 4.9 2 23 224 246 223 246 0.93
5 31 0.0025 0.24 13.0 0.8 1 23 250 273 250 273 0.92
6 31 1.5 1.4e+02 4.2 0.7 3 23 277 298 276 298 0.97
7 31 2.5 2.4e+02 3.5 0.1 2 19 305 322 304 325 0.91
8 31 0.12 12 7.6 2.1 1 23 373 396 373 396 0.96
9 31 2.3 2.2e+02 3.6 0.1 2 23 425 447 424 447 0.92
10 31 0.24 24 6.7 1.8 1 23 469 492 469 492 0.93
11 31 0.00042 0.041 15.4 0.3 3 23 499 520 498 520 0.92
12 31 0.0023 0.23 13.0 1.0 1 22 525 546 525 548 0.90
13 31 0.0042 0.41 12.2 0.4 2 23 554 576 554 576 0.91
14 31 0.0001 0.0097 17.3 4.1 1 23 580 603 580 603 0.97
15 31 0.002 0.19 13.3 0.4 2 23 610 631 609 631 0.97
16 31 0.016 1.5 10.4 1.6 1 23 637 659 637 659 0.97
17 31 0.0013 0.12 13.9 2.6 1 23 699 721 699 721 0.98
18 31 0.22 21 6.8 0.0 2 23 749 771 748 771 0.93
19 31 0.014 1.3 10.6 0.2 2 23 792 814 791 814 0.96
20 31 7.3e-05 0.007 17.8 0.5 1 23 819 842 819 842 0.97
21 31 0.66 64 5.3 1.8 1 23 847 870 847 870 0.95
22 31 7.6e-05 0.0073 17.7 1.7 2 23 873 895 873 895 0.97
23 31 0.0071 0.69 11.5 1.9 1 23 976 999 976 999 0.96
24 31 2.1 2e+02 3.8 0.0 3 23 1028 1049 1027 1049 0.96
25 31 0.14 13 7.5 0.5 2 23 1072 1095 1071 1095 0.96
26 31 3.5e-05 0.0034 18.8 0.1 3 23 1102 1123 1101 1123 0.94
27 31 0.001 0.097 14.2 1.3 2 23 1128 1150 1128 1150 0.95
28 31 0.0013 0.13 13.8 1.4 1 23 1155 1178 1155 1178 0.97
29 31 1.9e-05 0.0019 19.6 6.3 1 23 1182 1205 1182 1205 0.97
30 31 0.0037 0.36 12.4 0.6 3 23 1213 1233 1212 1233 0.97
31 31 3.3e-05 0.0032 18.8 1.1 1 23 1239 1261 1239 1261 0.97

Sequence Information

Coding Sequence
ATGAACGAGGCATCTGAGATCAGAGAACACACTGAGACGCACCGAAAATGCGGACCACTAAAGATCGCACAAGCTATATCAAAATTGCGCGCATTGGAAAAGTGTGTTAAACTAGACGTATCAAATATAACTTGCAGACGTTGCAAGGAACACTTCCTAGCTTTGGACGATATTATAGACCACCTGATGGAGGTCCATGATGAAAATGGGCCGGCAAAGTTACCCAATGCCAGTAAAGTCAGGAGGACGAATCTGCAAATTATATTCAACAACACCACACTGATTCCATTCAAATGGAGAGGCAAATACCTTTGTTTTTTCTGTGGAGAGGACTTAAACGATTGCAACGAATTGAGACAGCATACTAATGAGCACGGTAGTTGTACCGAGAAAGATAGAGCTATAAAATTAGTCAAATCAGGAGACGTTGAAGTCAAAATTGACGTTTCGGATATAACCTGCAAACTTTGTAACAAGTCCTTCTCACTTTTCGATGATATTTTAAGCCATCTAACTATCGAACACAAAATGCCTTACAGCAAAGATGTCCCCCTGTTTCTAACTACATATCGACTAGTAGATCTCAAATGCGTGTTCTGCGATAGAAATTTCAACTATTTTCATAAACTTGTCTCTCACGTTAATCATACTCACCCAGTCAACCATCTGCACTGTCAGGTTTGTCACCAGAAATTCAACAAAAAGAACGATCTCGATACACATTCTCGCGCCCGTCATAGGTTGAAATATTTCTGCAAGAAATGTCCTCTCATTTTTGATTCAAGTACTGCGTTGCAAAAGCATAAAGCGAACTCACACGGTTCACTTTGCAACGTTTGCTTCGAAGCGTTCCCTTCAGACCATACTAGGGTAAGCCACATAAAAAAGGTCCATTTCGGAAACGACGTCTTACAATGCGGCTTTTGTTTGAAAACGTTAACTACAAAAATAGCATTTCTCAATCACGCTGCGAAATGTAACGTCAAAGGTAATTGTGAGGAATACATCAAAACTGTcgtaaatgataaaaaaccgACGGTAGCTCAAATAAGGAATAATATCACTTGCGTTATCAATATGTCTACTGCTATACCTTTTAAGTTTTACATGAACAATTTCAGAtgcttttattgtattaaagaTTTTACCGAATGTGATGATTTGAAAGAGCATACGGCCATGGAGCATCCTGTTTGCGacgtcaaactcaaatgtatgCAATTACGGAACCGACAGTCCGGCATAAGAGTAAAGATAGACGTGTCCTCGCTCTCTTGTAAAGTTTGTTTTGAGCCAATGGAAGATTTGGAACATTTAATAAACCACTTGGTAGTAGAACACAAAGCACCGTACGATAAGGCCGTCGATCATAACTTCGAGCCTTTCAAGCTGATCAAAGACAATTTCCCGTGTCCATTTTGCACTGAGCCGTACAGATATTTCTGTACTCTTTTGAAGCATGTAAGCGAAAGCCATTCGGAGAATAGAGCGATTTGTCCGTATTGCGGGGTTACGTTTAGGACTGAATCAAATTTGCGATTTCATATTTCCCTCAAACACAATACTATAAGTTACAAGTGTAGTGCTTGCGACTTGAGTTTTCCAACAAGAAGGCACCTAAGGGAACATTCTGGTTCAGCCCACGGGAGTAAAGTGGCTAAATGTTCAGAGTGCTCAGAGAAATTTAAGTCCCCATATGCAGTACAGAGACATAAGATCGACGTGCATGGCATCGGACACAAGTGTTCATACTGCGGTAGAATGTTCACTAAGAAATCCTTCATGGTAGACCATATCCGACGGTCCCATCTCAAAGAAAAGAATGTGGAGTGCCCCGTCTGCTACCAAAGATTTTTCAACAAATACATGGTGAGCAGGCACATGGTTACACATGTGGGCGAGAGAAACTTCCATTGCGATATATGCGGGAAAAAGTTCCTCTGGAAGAAGAATCTTATAGGCCACATGTCCACGCATTTAAAGAATGAAAATGCACCAGCTCCTTACGGAGGGTGCGCCTCTGAGCGCCGGCGGAAAAACTTGAAAATACTATTCAACAACACCACGATTTTGCCTTTTAAGTGGAGACGCCGCTTTCAATGCTTTTATTGCCCCAAAAACTACGCTGAATACGATGAATTCAAAAAGCATACTAAATCCCATGGGCTGTGTACCACAAAAGATTATGCGTTGAAAATCATCAAAGGCGGTCACGTGGAAATTAAAATTGACGTATCGGAAATAACTTGTGAAATATGCAATGAACCGTTTGGAGACTGGCTGGAAATTGTCGATCATTTAATTATGAAACACAAAATGGAATTTGATAAAACAGTAGACATGCCCCTGCAAGCTTATAGATTAGTTGACATGAAGTGTTTATTTTGTGAGGAGAGTTTTACTTATTTTGGATATTTGATTAGTCATGTAAACGTAGCTCATCCTCAGAACTGCTACATTTGCGACGATTGTGGTGTGACATTCAATAAGAAAAGAGATTTAGCTGTGCATTTCAGGTCTTATCATCGCAAAGGAGGCTACCCTTGTGACCAATGTCCACTAATCTTTGAGAATTTCTGTTCCCGGCGTACGCATCGGAATAACGTTCACTATAGGAAATGTTCAAGTTGTAACCAAAAGTTTTCTACGCTAAGTTTGCTAAGGAAGCACATTTTGACCGAACATCCTGATAATGGCAGTTTAACGTGTGATTACTGTGCCAAACTCTGTCAATCTCTCCAAGGTTTGCGCCTGCACAAAAGCAAGTGCCGAGTCAGAATGCTCTGCACTACCGATGAGGCCATAGGCAGTTCTCTGTCTCTTCTCAACGAGCCGAAGAAGAAGcagaacataaaacaaataagaGAAAACATACACTGCATACTAAACATGTCTACGGCGATACCGTTTAAATTTTTCTCCAAATACTCCTGTTTTTACTGCTCAAAGAAATTTGTGGAATTCGATGATCTGAAATATCATACGGAGTCGGAACATCCAATTTGCGATTTGAAATCCAAATCGATGAAAAAATGCAGAGGAGAAAGAATAAATGTGAAAATAAGTATAGCTTCTTTGCTTTGTAAGGTCTGCGGCCAACCCATGGCCGATCTAGATGTCCTAATAGACCATTTAATTACAGAACACAAGGTGAATTATGATAAATCTGTCGTAGGTTGCTTAGAGCCGTTTCGAATCGTAAAAGATAACATACCGTGTCCACACTGCCCCGACCGTACATTTAGGTATTTTGGGATCTTGCAACGGCATTTGAACACCGAACATagcaacaataataaaatctgcGATTACTGTGGGCGCGCTTTCAAAAACGTTGCCAATCTTAAAGTACATATCTCCTATTCTCATTCAGGTAATGCAGAGTGTAATATTTGCggtataaagtataaaaatcaaTGGTGTCTCGCAAGGCACCGTGCTAAGTCTCACGATGCTAAAGATTACAAATGTTCGAAGTGTCCAGAGCTTTTCCGGTCTCAGTACGACAAGCAAAAGCATTTGATAAGAGTGCATGATATAGGACACAAGTGCGAGCACTGTGGGAAGATGTTCACGAGAAATTCGTTTATGAAGGATCATATACGGAGGACGCATTTGAAGGAAAAGAATGTTGCTTGCACTCTGTGCAGCGAAAGGTTTTTCGATAACTATTTATTGAGGATGCATATGGTGAAACATGAAGGGGAAAGAAAGTTCGCATGCAGCGTTTGTGGCAAAGCGTTTCTGAGGAGGAGCAACCTCCATTCTCACATGGAAATGCATAAAAAGTATGGCCATGCGATCGGATTGTTGCAGGACATGATATAA
Protein Sequence
MNEASEIREHTETHRKCGPLKIAQAISKLRALEKCVKLDVSNITCRRCKEHFLALDDIIDHLMEVHDENGPAKLPNASKVRRTNLQIIFNNTTLIPFKWRGKYLCFFCGEDLNDCNELRQHTNEHGSCTEKDRAIKLVKSGDVEVKIDVSDITCKLCNKSFSLFDDILSHLTIEHKMPYSKDVPLFLTTYRLVDLKCVFCDRNFNYFHKLVSHVNHTHPVNHLHCQVCHQKFNKKNDLDTHSRARHRLKYFCKKCPLIFDSSTALQKHKANSHGSLCNVCFEAFPSDHTRVSHIKKVHFGNDVLQCGFCLKTLTTKIAFLNHAAKCNVKGNCEEYIKTVVNDKKPTVAQIRNNITCVINMSTAIPFKFYMNNFRCFYCIKDFTECDDLKEHTAMEHPVCDVKLKCMQLRNRQSGIRVKIDVSSLSCKVCFEPMEDLEHLINHLVVEHKAPYDKAVDHNFEPFKLIKDNFPCPFCTEPYRYFCTLLKHVSESHSENRAICPYCGVTFRTESNLRFHISLKHNTISYKCSACDLSFPTRRHLREHSGSAHGSKVAKCSECSEKFKSPYAVQRHKIDVHGIGHKCSYCGRMFTKKSFMVDHIRRSHLKEKNVECPVCYQRFFNKYMVSRHMVTHVGERNFHCDICGKKFLWKKNLIGHMSTHLKNENAPAPYGGCASERRRKNLKILFNNTTILPFKWRRRFQCFYCPKNYAEYDEFKKHTKSHGLCTTKDYALKIIKGGHVEIKIDVSEITCEICNEPFGDWLEIVDHLIMKHKMEFDKTVDMPLQAYRLVDMKCLFCEESFTYFGYLISHVNVAHPQNCYICDDCGVTFNKKRDLAVHFRSYHRKGGYPCDQCPLIFENFCSRRTHRNNVHYRKCSSCNQKFSTLSLLRKHILTEHPDNGSLTCDYCAKLCQSLQGLRLHKSKCRVRMLCTTDEAIGSSLSLLNEPKKKQNIKQIRENIHCILNMSTAIPFKFFSKYSCFYCSKKFVEFDDLKYHTESEHPICDLKSKSMKKCRGERINVKISIASLLCKVCGQPMADLDVLIDHLITEHKVNYDKSVVGCLEPFRIVKDNIPCPHCPDRTFRYFGILQRHLNTEHSNNNKICDYCGRAFKNVANLKVHISYSHSGNAECNICGIKYKNQWCLARHRAKSHDAKDYKCSKCPELFRSQYDKQKHLIRVHDIGHKCEHCGKMFTRNSFMKDHIRRTHLKEKNVACTLCSERFFDNYLLRMHMVKHEGERKFACSVCGKAFLRRSNLHSHMEMHKKYGHAIGLLQDMI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00076805;
90% Identity
iTF_00076805;
80% Identity
-