Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063560.1:2317503-2327768[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 8.3 5.6e+02 2.0 0.1 3 23 120 140 118 140 0.94

2 17 0.032 2.1 9.6 0.0 2 23 144 166 143 166 0.92

3 17 4.2 2.8e+02 2.9 2.5 3 23 171 192 169 192 0.91

4 17 8.6 5.8e+02 1.9 1.2 2 23 396 418 395 418 0.89

5 17 0.012 0.83 10.8 0.5 1 21 426 446 426 447 0.95

6 17 0.0031 0.21 12.7 0.8 2 23 457 478 456 478 0.95

7 17 0.011 0.74 11.0 4.0 1 23 526 549 526 549 0.92

8 17 0.082 5.5 8.3 0.6 2 23 627 649 626 649 0.91

9 17 2.7e-05 0.0018 19.2 2.1 1 23 683 705 683 705 0.97

10 17 7.6e-05 0.0051 17.8 1.3 1 23 712 734 712 734 0.99

11 17 0.00011 0.0071 17.4 2.3 1 23 739 761 739 761 0.96

12 17 0.0075 0.5 11.5 3.3 1 23 767 789 767 789 0.97

13 17 2.9e-06 0.0002 22.3 1.5 1 23 795 817 795 817 0.97

14 17 0.0019 0.12 13.4 1.7 2 23 824 845 824 845 0.98

15 17 0.00077 0.052 14.6 0.5 2 23 853 875 852 875 0.97

16 17 4.3e-06 0.00029 21.7 0.4 1 23 880 902 880 902 0.98

17 17 0.00034 0.023 15.8 1.5 1 23 908 931 908 931 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	8.3	5.6e+02	2.0	0.1	3	23	120	140	118	140	0.94
2	17	0.032	2.1	9.6	0.0	2	23	144	166	143	166	0.92
3	17	4.2	2.8e+02	2.9	2.5	3	23	171	192	169	192	0.91
4	17	8.6	5.8e+02	1.9	1.2	2	23	396	418	395	418	0.89
5	17	0.012	0.83	10.8	0.5	1	21	426	446	426	447	0.95
6	17	0.0031	0.21	12.7	0.8	2	23	457	478	456	478	0.95
7	17	0.011	0.74	11.0	4.0	1	23	526	549	526	549	0.92
8	17	0.082	5.5	8.3	0.6	2	23	627	649	626	649	0.91
9	17	2.7e-05	0.0018	19.2	2.1	1	23	683	705	683	705	0.97
10	17	7.6e-05	0.0051	17.8	1.3	1	23	712	734	712	734	0.99
11	17	0.00011	0.0071	17.4	2.3	1	23	739	761	739	761	0.96
12	17	0.0075	0.5	11.5	3.3	1	23	767	789	767	789	0.97
13	17	2.9e-06	0.0002	22.3	1.5	1	23	795	817	795	817	0.97
14	17	0.0019	0.12	13.4	1.7	2	23	824	845	824	845	0.98
15	17	0.00077	0.052	14.6	0.5	2	23	853	875	852	875	0.97
16	17	4.3e-06	0.00029	21.7	0.4	1	23	880	902	880	902	0.98
17	17	0.00034	0.023	15.8	1.5	1	23	908	931	908	931	0.98

Sequence Information

Coding Sequence: ATGTCATCTGATGATTCTGATGATGAACCGCTATCAAAACTGGCTGTGAAGAAAACAGACCAAGATAGTTCCTATGAGGCGACTACTTCGGAAGAGAATGACGACGAATACATACCGAATAAAAAACGGAAAACTAATAAAAAGAAGGTGGTTTCCAGACCCAAAATTTCTATAACAATAAGACGCAGAGACAGAAGAGAACATGTACCTGACATAATAGAGCGTCCTACAGATGTATGGTTGTATATGAAAGATTTGAATCAAGCTGGACCATTTAGTTGCTTGCTGTGTTCAGAATGGTTTATTAACAGGACAAAAATGATAGTGCACTATGTACTAAATCATAAGAAAGACTTTTGTGGTATCTGCAGATATTTTGTTCCCGACCGGGCAACATGGTTAGAACATGTAAAGTTTCATATACCATGGCCATGCTCTCAATGTGTGGAGAACTTTGAAACTGAAGAAGAACTACGTCAGCACCTCAGTGCTGTTCATAACTTAGTTCACTGCAGACTATGCCACTTCAGATTGCCTGATAATGACGAATATAATGCTCACCTATTCCAAAAGCATAATGTAACCAATGTGAACACGAAATATGAAGAATTGTTGTGGGATTATGATGGCGGTCCCACATTTCTTTGTCTGCTCtgttctaaatccaataaccaGGTAGAAGCATTCTTTAGCCACTACATGGGTTTTCACCATTTCACTCTTCATTGCTTCTCGAGGTTTATTTCTGGCAAAGATCCACCATTTGCTATATTTGGAGCTCAAGTCAGCACTCAATTTATAGAGAGTCAGTTGAAAACTCAAGAACGGTTTGGATATGTGGAGTTAGACAATAAACAGACTGAAATGCAAGATGTGGAAAGCAGCGATGCTCAGGCTTTGCTTAAGGCTCTTATACCAGAAATTAAACAAGAAAATGTCAGTGATGATGAAGAAAAAGCAGATGGAGCTAAAGGAAATGAAGGAATAGATGAACACCGTAATGAGATTCTGAAATCATATAAAGGGGATGAAGATTTTGATGTCACTCTAGTTGAGTTGGTTATTATGGAGAAAAGTTATGTTGAATATATTAACCATACATTACTTGATATGAATGCAAATGTTGTGCCCGAAGTATCAGATATTGAATATGATTCCATAAAAGCGGAGTTTCCATCAGAAGTAACTTGTGGACTGTGCAGCACTAGACATAACGCACCATACAAATTCACCGCACATATGAACAAAATGCACTCAATTAAGTCTTTACCAGTATATTGTTGCAGGGTGTGCGCAACTACTTTTGAAAGTAAGAATGAGCTTGAGTCTCATATAAACGAGGAGCTTGGTGAATTCGATGATTTGTGGATCTGTCAGTTTTGCGACAAGGAATTTGACAACCGAGAAACGACAAGACGCCACTTGAATGAGCATATTGATGAATTGGAGTTTGACAATTGTTTCAGTCCACATTTAGGCTTCAAGTGCCGCTATTGTCCCATGTTGTTCTGGAACGAGCCAGACAGGGAGTCCCATCAAGTGCGAGTTCACTTTGAGAACAATATTGAAGATTATTACAAATGTCAAGATTGTTCAGAAACTTTTAGTGATAAgGTGTTCTTTGTTCACCACTACTATGAGAAGCATCAGAGCACAGAATTGGAGCCACCCACTTACCTCTTCAAGTGTTGCCGCTGTTGCCAAGTGCTGCCCTCTATAGACGACATGCGGAATCATTTCAATGAGAACCATCCGGAAGCCAGGAAGATATTCTGCTCGTTCGACTCTTGCATGTACAAACCGCTGAGCCAAATGAAAACTTTTAAGTATCATTTGAAGTTAGTCCACGCGTCCGGCAACCGAGTGCCGCGCAAGATCAGCTGCACTCTGTGCGGCCGCGAGTTCCCCAACTCGCGCGCATGCAGCACGCACATGGCGCAGGCGCACGGGCCCGGACGGTTCAAGTGTAAACTGTGCGGAGATCTCATGCATACCTTGGATGAGAGGAAGCTCCATTACCTTTTGCGTCATCCCGGTCGGCACCCGTACGAATGCAAGGAGTGCGGGAAATCCTTCCAATACAAGTCCTCGCTGTACATGCACAAACAGGAGCATGTACCAAACAAAAAGATCTACAAGTGCGACGAGTGTGGAAAGACTTTCTTGaaaAGGGATTCTTTTCGCGAACATCAGATGATTCACGAGGGGCCGCGACACGCTTGTTCCTACTGTCCGATGCGTTTCGTTCAACGCTCGAACATGTTGCGACACGAACGGAGACACACGGGCGAGAGGCCGTATGCGTGTCAGCATTGCCCTCGAACATTCGCTGATAAAGGAGCGTGCACTTCGCATTCTAgaACACATTCCAAACAAACTTCCTTCGCCTGTCTGTATTGCGGACAGACATTCGTGCAGAAATCTAAGCTGACGTATCATATAAGAAAACATACTGGAGAGAATCTGGAGACTTGTCCGGTCTGCTCCAAGCTGTTCACCAGCGGTTGTTCCCTGAGGGAGCATATGAAGATTCACGATGCCAAGAAAGGATCCATCAAGTGTCCATTATGTGACAAGCGCTACCAAGACGAGCGCTACATGCTGCGCCACTTGCGCATCAACCACACGAGCGCGCAGTACCCGTGCCCCGTCTGCGGCAAGGCGTTCGCCACGTGCACCAGTCTCAAGTATCACGTGATCACGCATAGTGCCGTCAACACGTTTAAGtgcAAAATCTGTCCGAAATCCTACGCGGCGAAGAAATCCATACTCAAACATCTCCGCAAACGACATGGCTTACGAGAAGCCGTGGTCAACCTCAAAGATTTCTACAGCCGTGTGGATCCGAGAGATTGCGAGTTGGGCCTCGACGAAGATACCATGACCAAAATATTCGGACCTCCGAACAAAAACCAACTGATAATCTCGGACAATTTGAATGTTAATGAGAAAGGTGAGACTTCATGCGAGAAATCCCACGAAGTGCTGATAAAGAATGAAGTGCCGAGCGAGCCTGAGGAGGAACTGGAGCCGACTGATTTCGTCAGCATTAAGATAGAGCAGTGTGCTGAAGATGATTAG
Protein Sequence: MSSDDSDDEPLSKLAVKKTDQDSSYEATTSEENDDEYIPNKKRKTNKKKVVSRPKISITIRRRDRREHVPDIIERPTDVWLYMKDLNQAGPFSCLLCSEWFINRTKMIVHYVLNHKKDFCGICRYFVPDRATWLEHVKFHIPWPCSQCVENFETEEELRQHLSAVHNLVHCRLCHFRLPDNDEYNAHLFQKHNVTNVNTKYEELLWDYDGGPTFLCLLCSKSNNQVEAFFSHYMGFHHFTLHCFSRFISGKDPPFAIFGAQVSTQFIESQLKTQERFGYVELDNKQTEMQDVESSDAQALLKALIPEIKQENVSDDEEKADGAKGNEGIDEHRNEILKSYKGDEDFDVTLVELVIMEKSYVEYINHTLLDMNANVVPEVSDIEYDSIKAEFPSEVTCGLCSTRHNAPYKFTAHMNKMHSIKSLPVYCCRVCATTFESKNELESHINEELGEFDDLWICQFCDKEFDNRETTRRHLNEHIDELEFDNCFSPHLGFKCRYCPMLFWNEPDRESHQVRVHFENNIEDYYKCQDCSETFSDKVFFVHHYYEKHQSTELEPPTYLFKCCRCCQVLPSIDDMRNHFNENHPEARKIFCSFDSCMYKPLSQMKTFKYHLKLVHASGNRVPRKISCTLCGREFPNSRACSTHMAQAHGPGRFKCKLCGDLMHTLDERKLHYLLRHPGRHPYECKECGKSFQYKSSLYMHKQEHVPNKKIYKCDECGKTFLKRDSFREHQMIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACQHCPRTFADKGACTSHSRTHSKQTSFACLYCGQTFVQKSKLTYHIRKHTGENLETCPVCSKLFTSGCSLREHMKIHDAKKGSIKCPLCDKRYQDERYMLRHLRINHTSAQYPCPVCGKAFATCTSLKYHVITHSAVNTFKCKICPKSYAAKKSILKHLRKRHGLREAVVNLKDFYSRVDPRDCELGLDEDTMTKIFGPPNKNQLIISDNLNVNEKGETSCEKSHEVLIKNEVPSEPEEELEPTDFVSIKIEQCAEDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00146740;
90% Identity: -
80% Identity: -