Atra008486.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063558.1:10880607-10888280[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3e-10 6.9e-08 32.7 0.0 4 39 174 210 171 214 0.89 2 4 1.5e-10 3.5e-08 33.6 0.3 2 39 226 263 225 266 0.92 3 4 2.4e-14 5.7e-12 45.8 0.0 2 45 281 325 280 325 0.96 4 4 1.9e-17 4.3e-15 55.7 0.0 1 43 332 375 332 377 0.95
Sequence Information
- Coding Sequence
- ATGCCTGGTAACGGAGCAGCTCAAATAAAATGCGAACCACTATCGGATGACGACGACAGCAATTCTTTCGCTCACGGGTTTTTAGCCAATCAGGTATTGTCACTGGGACGGCTCGTCAAATCAGAACATGTCTGCAGACCTGATGATGGAGTGCCACAAATACTACAGCATTTAcagTCCGAAGGCTTGGAGGAGTTGGCACCGCTGGCGCCGGCGGGGCCCGCGGCGACGCCTGTCTGCGTGAAGCAGGAGCCCTCGGACGCAGCCCCGGCCTCCGCCTTGGAAACGCTGGAACCGGCGCCCCATGCCACGGGCTCCACTCTTCTCGACAGGCATATGTCCATGCTGTGCTCCCCCGAAGAGCCTGACTCCTCTGACTTCATGCCTCTGCTGGCGGTCAAAGATGAACCACTGTCCGAAGGCGAACAACAACACTACAGCGGCGAGGACACCAGCGACTCGTGCGGCACCCAACCCGAGCCGGCCCCCAGGGCGAGCCCCAAAACCTGGACGCAGAAGGATATGGAGAACGCGCTCGAGGCGCTGCGGAAACATAACATGAGTCTCACTAAGGCTTCAGCGACATACGGCATTCCGTCGACGACGCTCTGGCAGCGAGCACACCGGCTCGGCATCGACACGCCGAAGAAGGAAGGCACCTCCAAGTCGTGGAGTGAAGCTGATCTCAGGGGAGCCCTGCACGCATTACGAGCGGGAGCAATTTCCGCCAATAAGGCTAGCAAAGCCTACGGGATCCCCAGCAGCACGCTGTACAAGATAGCTCGCCGCGAGGGCATCCGGCTCGCGGCGCCCTTCAACGCGGCGCCCACCGCGTGGCGGCGCGCCGACCTGCAGCGCGCGCTCGACGCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCTCGCAGTTCGGGATACCCACAGGCACTCTGTATGGTCGCTGCAAACGCGAGGGTATCGAGTTGTCTCGCTCCAATCCCACTCCTTGGTCGGAAGACGCCATGGGGGAGGCGTTAGAAGCTGTCAGgGTAGGACAAATGTCAATAAACCAAGCAGCCATCCACTTCAACCTGCCTTACTCCTCGCTGTATGGCAGATTCAAACGATGCAAGTACCAAATGCAGACACTTCAACCAATGTCGCAAACAGATCAAAAGCCAATAGAAATGGAGCAGACGTGCCAACCGCACGAGGTTTTCTACCAACATCCGGAGCAGTACATGCAACCTACAGATATGATGGAacaaaacattcaaaatattcCAATGTTCGATTACCAGGCGTACTATCAAAATGGAGTCGTCAGTTGA
- Protein Sequence
- MPGNGAAQIKCEPLSDDDDSNSFAHGFLANQVLSLGRLVKSEHVCRPDDGVPQILQHLQSEGLEELAPLAPAGPAATPVCVKQEPSDAAPASALETLEPAPHATGSTLLDRHMSMLCSPEEPDSSDFMPLLAVKDEPLSEGEQQHYSGEDTSDSCGTQPEPAPRASPKTWTQKDMENALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGTSKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALDAIRCGASSVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQTLQPMSQTDQKPIEMEQTCQPHEVFYQHPEQYMQPTDMMEQNIQNIPMFDYQAYYQNGVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720139;
- 90% Identity
- -
- 80% Identity
- -