Atra004751.2
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- Rfx2
- Assembly
- GCA_032362555.1
- Location
- CM063554.1:1622101-1640828[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.082 5.7e+02 1.8 0.0 3 17 184 198 182 203 0.86 2 7 0.17 1.2e+03 0.8 0.0 3 17 212 226 210 231 0.85 3 7 0.17 1.2e+03 0.8 0.0 3 17 240 254 238 259 0.85 4 7 0.17 1.2e+03 0.8 0.0 3 17 268 282 266 287 0.85 5 7 0.17 1.2e+03 0.8 0.0 3 17 296 310 294 315 0.85 6 7 6.8e-37 4.7e-33 114.2 0.1 3 78 324 399 322 400 0.97 7 7 4 2.8e+04 -4.0 0.1 25 33 728 736 726 741 0.77
Sequence Information
- Coding Sequence
- ATGGCGGCGCGGCTTGCGGGACCCGCTCAGGGAGCGGGTACAGGCGCGGGCGGGACATCCCCGAGTGCAGTGCGAGAGCTGATCGTCATACCGGAGATACCCAACTCCATACATCTGCAGCACGCTATACATCAGGTGACAAACAATGTGGTGGAAGTGAACGGTGACAGTTCGGGCCACTCCAGCCCCACTGCGGAGGCGCAGCATACGTACATTACGGTATCAATGCAGGGGGCATGGCAGCAGCCGAACGTCAAAGCGGAGATCAGCAGTGAGGAAGaaaGCGAGGGCGGCAATGGAGTCAACTACCACGTGCAGTATGTGGAACCGCAGGAGATCTACACGCAGAATCATCAGCAACATctCGAGCCGCTACGGTCATACCCGGTGTACAGCGTGACGGCGGTGGCTGACGATCCCGCCGCCGAGGCGTGGCCCGCTGCCGagttctctgcctacccccatgTGGTGGCAGGCGAGGAGGCTGAAACGGCTTCGTCGCCGGCGACTCCTGCTCGTGAGGCTCCACAGCCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACTGCCGAGGGTGAGTGTGGCATCATGTCTCCTGTAGCAGACacagcgcccgccgccgcgcagtgGCTGCTCGACCACTACGAGACTGCCGAGGGTGAGTGTGGCATCATGTCTCCTGTAGCAGACacagcgcccgccgccgcgcagtgGCTGCTCGACCACTACGAGACTGCCGAGGGTGAGTGTGGCATCATGTCTCCTGTAGCAGACacagcgcccgccgccgcgcagtgGCTGCTCGACCACTACGAGACTGCCGAGGGTGAGTGTGGCATCATGTCTCCTGTAGCAGACacagcgcccgccgccgcgcagtgGCTGCTCGACCACTACGAGACTGCCGAGGGTGAGTGTGGCATCATGTCTCCTGTAGCAGACacagcgcccgccgccgcgcagtgGCTGCTCGACCACTACGAGACTGCCGAGGGCGTTTCCCTCCCCCGCTCCACACTGTACGCCCACTACCTGCGCCACTGCACCTCCCACCGGCTGGACCCGGTGAACGCGGCCTCCTTCGGGAAACTCATCCGGTCCGTCTTCATCGGGCTGCGGACCAGGAGGCTGGGCACCAGGGGGAACTCCAAGTACCATTACTACGGCATCAGGGCGAAGGCGAATGTCAATGATTCCCCGCCCAGGCAGGATATGGGCGACGATAAAGGGGAGATATCGGATCAACAGGAGCCCCGTGAACGCGAAGCGGAGTCAACCCCGGCGGGCCTGGCGGGGCTCGCACACAGGCAGTTCCTGGGCCCCATCACAGCGCCCGAGCCGCCCGAGCTGGTGGTGGAAGATCTGCCCGAAGATGTTCCCGCTTCGGCCATCGAAGCTCTGAGAGATCATCATAGGGCGCACGGCGTGGAGTTCCTGGAGGCCGTGAGCGCGCTGGACACGGGCGCCGTggagcgcgcgcgccgcgccttCTGGCGGGGCGGCCTGTGTCGCCGCGCGCTGGCCCGGCTCGCCACCAGGGCGGACGTGGCGAACTGGTTGCGACGTGCCGACTTGGTTCTATACCAGGCCGCTGTGGATTTGCTGCTGCCCGACGTACTGCGGCCCATACCGCCGCAACTCACGCAGGCGATCCGCAACTTCGCGAAGAGCCTGGAAGGCGCGCTGTCGGCGGGCGGCAGCGGAGCCCCCAGCGCAGCCGCccgcgcggcggcgggcgcggccggAGCGCTGGCGGCCGCGCTGCGCCGCTACACGTCGCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCAACAACCAGCTGCAGATACAGCAGATGCTGGCGGACTTGAACCGCGTCGACTTCCGCGTGGTCCGCGAACAAGCCGCGTGGGCGTGCTCCTGCGGCAGCTCCTCCACTGCGCACCGGCTGGAAGTCGATTTCAAGGCGACGCTGGGGCGCGGCGCGTCGCTGGAGCAGTGGGCGGCGTGGCTGGAGCGCTGCGTGGCGGGCGCGCTGGCGCCGCACGCCGCGCGGTCCGACTTcacggcgcgcgcgcgccgcctgcTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCCGCGAGCTCACGCTCAGGTCGGCGGCGTCGTTCGGCTCGTTCCACCTGCTGCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGGCGCGTGGCGCGCCACCACGGCACGCCGCCCATCGCCGTCATGCAGCGGCAGCTGGAGGAAGATTTGACGGACGAGAACGGTCGCACGGCCGAGGACGACGACAACGAGTGGGAGTGGGAGGACGACGACGATGACTCTGACGACCCCGTCCCCGACAAGAAACACAAGATGGAGTGA
- Protein Sequence
- MAARLAGPAQGAGTGAGGTSPSAVRELIVIPEIPNSIHLQHAIHQVTNNVVEVNGDSSGHSSPTAEAQHTYITVSMQGAWQQPNVKAEISSEEESEGGNGVNYHVQYVEPQEIYTQNHQQHLEPLRSYPVYSVTAVADDPAAEAWPAAEFSAYPHVVAGEEAETASSPATPAREAPQPPRMPPATVQWLLDHYETAEGECGIMSPVADTAPAAAQWLLDHYETAEGECGIMSPVADTAPAAAQWLLDHYETAEGECGIMSPVADTAPAAAQWLLDHYETAEGECGIMSPVADTAPAAAQWLLDHYETAEGECGIMSPVADTAPAAAQWLLDHYETAEGVSLPRSTLYAHYLRHCTSHRLDPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKANVNDSPPRQDMGDDKGEISDQQEPREREAESTPAGLAGLAHRQFLGPITAPEPPELVVEDLPEDVPASAIEALRDHHRAHGVEFLEAVSALDTGAVERARRAFWRGGLCRRALARLATRADVANWLRRADLVLYQAAVDLLLPDVLRPIPPQLTQAIRNFAKSLEGALSAGGSGAPSAAARAAAGAAGALAAALRRYTSLNHLAQAARAVLNNQLQIQQMLADLNRVDFRVVREQAAWACSCGSSSTAHRLEVDFKATLGRGASLEQWAAWLERCVAGALAPHAARSDFTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLLRLLYDEYVSYLIERRVARHHGTPPIAVMQRQLEEDLTDENGRTAEDDDNEWEWEDDDDDSDDPVPDKKHKME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -