g7813.t1
Basic Information
- Insect
- Amphipyra tragopoginis
- Gene Symbol
- -
- Assembly
- GCA_905220435.1
- Location
- HG992016.1:1916108-1919309[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.28 18 5.0 0.1 1 20 168 187 168 188 0.95 2 21 3.3e-05 0.0021 17.4 3.0 2 23 197 218 196 218 0.97 3 21 0.14 9.3 5.9 1.8 2 23 222 243 221 243 0.97 4 21 9.8e-05 0.0063 15.9 2.1 1 23 248 271 248 271 0.97 5 21 3.7 2.4e+02 1.5 1.5 2 19 279 295 279 298 0.88 6 21 8 5.2e+02 0.4 0.2 1 7 299 305 299 307 0.86 7 21 0.094 6.1 6.5 0.9 2 23 330 352 330 352 0.92 8 21 1.4e-05 0.00087 18.6 1.0 1 23 358 381 358 381 0.98 9 21 0.31 20 4.9 0.2 1 21 385 405 385 406 0.93 10 21 4.4e-05 0.0028 17.0 0.5 1 23 414 437 414 437 0.97 11 21 0.24 15 5.2 0.9 1 23 442 465 442 465 0.92 12 21 0.0015 0.095 12.2 0.1 2 23 478 499 477 499 0.96 13 21 0.0011 0.068 12.6 1.2 1 23 505 527 505 527 0.98 14 21 0.026 1.7 8.3 1.9 2 23 533 553 533 553 0.97 15 21 0.00012 0.0075 15.7 1.0 2 23 559 580 559 580 0.97 16 21 0.036 2.3 7.8 0.1 2 23 585 605 584 605 0.95 17 21 3.4 2.2e+02 1.6 4.4 2 23 623 644 622 645 0.93 18 21 1e-05 0.00067 19.0 3.1 1 23 651 673 651 673 0.98 19 21 0.00029 0.019 14.4 0.9 2 23 679 700 678 700 0.96 20 21 0.019 1.2 8.7 0.8 1 23 706 729 706 729 0.93 21 21 0.014 0.89 9.1 0.6 3 23 736 757 735 757 0.94
Sequence Information
- Coding Sequence
- ATGGACTATAAGCTGAAGCTCAAAAATGTCCTCCACAACACACAGTATTGTGGGATATGTTTGGATAATGAAGATAATATGACCACAATAGATGAAGATCTAGAGATTATTGTGAACCAGCAGACTCGTACCAAGGCGCTGAGAGTTATTATTAATACTGTTTTCAAAGAGGCTGAACACATTTTAGCAAGTGCGCTTATATGCAATAGCTGTACAGAAAAACTTATCCAgtcatatatttttatagaaaatgcTCAGGAAACACATAAAGTTATAAACAACTATATAGTTGACTTATCTAGTAAAtctgatgatatttttaatcatttaaCCGATTCAAGTGTAGAAAGTtcaaatgttgttattgtattaGAAAATAGTGTTAACAATTTTCctgaaaaagataaagaaagaaaagaaactgTAAAAGATGAAGCTAAGACAATAGTGAACACAAAGAATGAATTCATTAAAGTGAAAAAAAGAACAAagtgttccaaattcaaatgtgTGAAATGCAATATCATTCTACCCTCATACAGAGCGTTGAAATTACACAGAGTTGAATGTGAGGAACAGAAGTTATTAGAATGTAAAGTAtgttttaaaacatttagaaacaaacattttttgataGCACATTATAAAGTGCACTCTAGGGTAAAATGCAAGGTTTGCCATGAAATACTCCATGAAGATGAATTATTAGAACATCTGAAAACATATCATGAAGACTGTTTATACAAATGCTTGAAATGTGATGAGGTCTTTTATTCCTCCAATGCCTTGCAAACCCATGAAAAGATCTGCCACCCAATCCGAGAAGATAATCCACAGTGTTTGATGTGTCTCAAAAACTTCACTGAAGAAGAATTGAGGCTACATTCCTGCAAGTATAGTTGTCCGGAATGTTCTGAAATTCCTTGCATGCATCATAAGTATCTAATGTTTTACCGAGAACAGATTTTGAACCATGCTGTTAAAGCTAAGTGCCTGGATTGTGACTATGTTTGTAGAAGAAAGGAGATTCTGTTAGGCCACGTGAATCGGGAACACTTGAATCATCATCCTTTTACTTGTGATAAATGCGGTCAGCAGTTCTATTCTAAAGTTGTTCTAACAGCTCATATCCGTAGGTTCCATGAAGACTCCTTTATATGCCTGTTCTGTGATTCGGAGTTCAGCAATATCAATACTTATGAGAACCATGTGAAAGCCTGTGAGGATATTAAAAGGAGGTTTGTTTGCGATGATTGTCCAGCCTCTTTCGATTCTTCTGATAGTTTAATGTACCATAAAAAACGTAGGCACAGCAAAGATGTTTTTCCATGCGGTCTTTGCAATAGAAAATTCCTAAAAGAATCTAAAAGGAAAGAGCATATGGTCAAGGTACATAGTGGTCTtcaaattaagaataaagttaTGAATGTAGAATGCGTTGTTTGTCAAGATAAATTTGATACAAAAGGAGAATTAGTGCAACATATGAAATCTCACGGACCAAATACTACATATCCGTGTAGAATATGCAACACTGAATATGAGACTTTAAGACAATTTAGGGCCCATAACCGCAAACATAACGGCCCGTTTGCCACTTGCCATATTTGTGGCAAAGAAATGAGGGAAGTACTcctaaaaaaacatttgactACCCACTCAGATACAATAGAGACATGCGAAACCTGCGGACGttcatttcaaaatataactttattaaaATACCACCAGAAAGTTCATTTAGAAAGTGTACCATGCCCTAAGTGTAAGAAGATGATAAACCCAGCGAGACTACGGCGGCATTGGAAAGGGCATCTAATTGAGGAGAACCCTAGCCGCGGAGTTAAAAAACAACAGCCTAACTTAAAATGTGAACAGTGCGACTACAAGACATGGAACAACACACTTTTGGAATGTCATATGAACCGCCACCACTTAAAAATCAAGCCATACGTTTGTCATATATGCAGCAAAGATTTTATAGGCAAACACTTGCTGAAAAAACACATTGAAACGCATGACATGAGAAGTGTAGTCTGCATGGTTTGTTTGAAGAGCTTCGCTAACTCTGCCTGTCTGAAAATGCATTTACGTTTGCATACCGGAGAGAAGCCTTTTACCTGTGAAATATGTGGAGATAGATTCCGTTCATCTAGTATTATGAATGTACACAAGCTTAAAAAACATTCGGATAAGAGTAATATTTGTCCGTTGTGTTCGAACAAGTTTCATACTGTGAGGGATTTGAGGAGACATGTTATTATAGTGCATTGGAAACAAAAGAATAAGCGGTTTGATCCTAGGGAGTTAAAAGGGTTAGATAAGGAACATTATCATTTGTTTCACGATGGTAGGAGAGTTAAAGTTGCTGAGGAAGATATTGATTTTTATATGCCTTGttga
- Protein Sequence
- MDYKLKLKNVLHNTQYCGICLDNEDNMTTIDEDLEIIVNQQTRTKALRVIINTVFKEAEHILASALICNSCTEKLIQSYIFIENAQETHKVINNYIVDLSSKSDDIFNHLTDSSVESSNVVIVLENSVNNFPEKDKERKETVKDEAKTIVNTKNEFIKVKKRTKCSKFKCVKCNIILPSYRALKLHRVECEEQKLLECKVCFKTFRNKHFLIAHYKVHSRVKCKVCHEILHEDELLEHLKTYHEDCLYKCLKCDEVFYSSNALQTHEKICHPIREDNPQCLMCLKNFTEEELRLHSCKYSCPECSEIPCMHHKYLMFYREQILNHAVKAKCLDCDYVCRRKEILLGHVNREHLNHHPFTCDKCGQQFYSKVVLTAHIRRFHEDSFICLFCDSEFSNINTYENHVKACEDIKRRFVCDDCPASFDSSDSLMYHKKRRHSKDVFPCGLCNRKFLKESKRKEHMVKVHSGLQIKNKVMNVECVVCQDKFDTKGELVQHMKSHGPNTTYPCRICNTEYETLRQFRAHNRKHNGPFATCHICGKEMREVLLKKHLTTHSDTIETCETCGRSFQNITLLKYHQKVHLESVPCPKCKKMINPARLRRHWKGHLIEENPSRGVKKQQPNLKCEQCDYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMRSVVCMVCLKSFANSACLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKSNICPLCSNKFHTVRDLRRHVIIVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVAEEDIDFYMPC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01425435; iTF_00172150;
- 90% Identity
- -
- 80% Identity
- -