Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 7.2e-18 4.1e-15 54.2 0.0 1 43 27 70 27 72 0.95

2 2 0.73 4.2e+02 -0.3 0.3 6 15 164 173 153 175 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	7.2e-18	4.1e-15	54.2	0.0	1	43	27	70	27	72	0.95
2	2	0.73	4.2e+02	-0.3	0.3	6	15	164	173	153	175	0.80

Coding Sequence: ATGTGGCAGAAGTGTTGGAACACGCAGACGTTGGTCCACAACCTGAGATTCCGCGAACGTGGACCGCTCAAGTCCTGGCGACCAGAGACCATGGCTGAGGCAATCTTCTCCGTGCTTAAAGAAGGCCTGTCCTTGTCGCAGGCTGCAAGAAAATATGATATACCGTACCCGACGTTCGTCCTGTACGCGAATAGGGTGCACAACATGCTGGGCCCCAGCGCTGACGGCGGCGCAGATTTAAGACCAAAAGGGAGGGGTCGACCGCAAAGGATCTTACTAGGCGTTTGGCCCGACGAGCACATTCGCGGCGTAATCCGTGCAGTTGTATTCAGAGACACCCACGCGCCGTGCGCCACTCAGGCCACAAACCTTAAAGAGATCGAACTGCCGGGCTACCCCGCCATCGCACCGGATGGTGTGGCCGTTCAGAACGCTTATATCGGGTGTGGCAACGGTCGCGAGGGACGCATGTCACCcaacgccgccgccgccgccgcggtCGCTGCCGTGGCGCATGGCCTGCGACGCCAGATGTGCAACATGGTGGCGGGACAACGGCCCCCCGACCACCCCCCTCACCTGGGCCCGCCGATGCAGTCATCGCCGCAGCTCACGTCACCGCTCTCCACTGGGTTGGAGTCGCCGCTGTGCTCGCCCCCGCCGCCGGGCCACGCGCTCGAGCCTGCCAAGCACACCGACCCGTTCCGCCCCTTCGCCTCACCGACAGATAGCCGCTACGGCGACCGCGATACTTCTTCCGATATCACTGAGATGGGACCGCCGAAAAACGGTCAGGGCCTTGCCAGGAAGGGCCCTGGTCAGGGCTCGTCGCCCTCCGAGCTGGATGCGGCTGACGGGCGTGCGGATATCTGA
Protein Sequence: MWQKCWNTQTLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPCATQATNLKEIELPGYPAIAPDGVAVQNAYIGCGNGREGRMSPNAAAAAAVAAVAHGLRRQMCNMVAGQRPPDHPPHLGPPMQSSPQLTSPLSTGLESPLCSPPPPGHALEPAKHTDPFRPFASPTDSRYGDRDTSSDITEMGPPKNGQGLARKGPGQGSSPSELDAADGRADI*

Sequence clustering based on sequence similarity using MMseqs2