Aocu016647.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amphipoea oculea
Gene Symbol
ham
Assembly
GCA_945859585.1
Location
CAMAOF010000150.1:4527333-4564266[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.26 21 6.2 0.0 2 23 249 271 248 271 0.95
2 9 0.00079 0.064 14.1 0.8 1 23 278 301 278 301 0.93
3 9 1.7e-08 1.4e-06 28.8 0.1 1 23 307 330 307 330 0.96
4 9 1.4e-06 0.00012 22.7 1.7 1 23 336 358 336 358 0.95
5 9 5.1e-05 0.0041 17.8 6.1 1 23 364 386 364 386 0.99
6 9 0.0001 0.0084 16.9 0.4 2 21 394 413 393 414 0.94
7 9 1.2e-08 9.9e-07 29.2 0.7 1 23 811 833 811 833 0.98
8 9 4.4e-07 3.6e-05 24.3 1.7 1 23 839 862 839 862 0.97
9 9 1.7e-05 0.0013 19.4 3.2 1 23 868 890 868 890 0.98

Sequence Information

Coding Sequence
ATGAGAAGTGCAGCAGACAGCCAAGAGTCTGGCAGTCCACCGCCGAGCCCGGCTGACTCTGCCACATCAGAATCAGCGCCCACCTTAGTTCACATCAAGCAAGAAAACATGCCTCCAGGAACAGATGTTAAGGAGTACTACGGTACTCTAGATTTTGGGCTATCAGACACATATCTATCCAATAAATTCCCGGACTATGGAAGAGGATACTTACCTAGACCTCTAGATCACAAGTCGGTCAAAAATGAGGATGGGACAAAATGTGATGATCTAGATGTAATTAGGAGGATAGAGGATATAGATTTAATTCTACAACAACATTCATTGATGTTTAAAAGTGGAGGGATATTTGCCACAGTGAATATTGCTAATGGAACTCAATATGGACCCTTTCTGGGATTGTTGGAGAATCAGCCGAAGGACAGGCGATTTGCTTGGGAGGTCCGTGATAAGAATGGCGTCAGTGGCTGGCTGGACGCCACTTCAGAGAAGAGCAACTGGCTCAAAATGGTGCGCTCCACCAACTACCCGCATGATGTCAACGTACAACCTATTTTGTTGGCTGGACAGGTGTGGTACAAGGTTGTTCGGGAAGTTCCCTCCGGACAGGAGTTGCTGCTGGGTCCTCGAACACCCATCTACTTAGATGACATACTCTCTTTGGACTCAAAGCGTCAGTCTTCTATTGATAAGTTCAGCTCTCTGGCATCAGCTGACGACGAAGAACGAGAGGACGCTGACATCCGCTGCAGCTTCTGCGATCTACCCTTCCCTAACATCGACATTCTCGATCGGCACTTGATAACGGAGCACGCCCAGCCGGCCGCTGCATTTCATTGTGAACTCTGTAACAGAGCTTACAGCACTCGGGTACTGCTCCTGCGACACCGTGCGCTTGCGCATACTGACATCAGAAAGTACCCCTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATTCGTGCGCAGCACGCGGGAGCCCGCAGCCACGCCTGTCCTGAATGCGGGAAGACCTTCGCGACTTCCTCCGGCCTGAAGCAGCACACACACATACACTCCAGCGTCAAGCCCTTCCAGTGCAAGGTTTGCTTTAAGGCTTACACCCAGTTCTCCAACCTCTGCCGTCACAAGCGGATGCACGTTGCTTGCAGAGCTCTCGTTGAATGCGGAAAATGCGGCCAGTCCTTCACATCTTACGCCTCTCTTACTAAACACAAGAGATTCTGTGACACCGCTGCCGCCGCTTCAGTCAACCTCCGAGGGCAGATGCCCCAAGGTCTACCGCAAATACCGTCACTACAAAACGTCGGGATGAATAACCCAAATAACACGAATCCGTTCCCGATGTACAGGGGACCAACCCTGCCACTGCCATACAATACGTTTGCTCACTACCCGGCGCTGTTTTCTGCCGCCGCTGCTGCTGCCTGTCCACCCGAGTTCCTTAGCCCATTGCTCTTCAACGTGCAAGGAGCAAGACTCGCTATGGAACACGACATGGCAATGTCAAATGCTAATTTGGTATCCAAACAGCAGGAAGGCCGTCTATCAGTAAAAAGCATGGACAGCTCAAACTCTTTAGATGATAACAAGAAGCCTAAAGATTTGGATTTCGACAACAAAAGAGACAGCTATAGTTCAGATAGGGCTACGCCCAACAAATCCCATAGTCTTTATTCGAAGCAATCGCCTCCTTCTGGGGAGGAAGCATCTTCTCAACGCCGACCGTCACCAGTAATGCCACTGTCCACACCGATTGCTCCATTCAGTTTCTCAAGAGATGAAATGAAGCGCAAGTCTCCGTTCAACTTCTCTCTCAAACTCAATAATAATGACATTCAGGGTAACAAGTCTTTATCACCATTACCTAAAGACTTGTCCAAGAATGTCATCGAAGACGATAAAATTTCTGAATATTCGGACGTCGAAGAGGATACAAAGAAAGATGAAGGTGACCAGCCTTTGGATCTATCTGTTTCAAGGAAACAAAACGATAAGGATTCTGAAGCAGAGAATGACGATCGTTCCTTTCGCCACTCGGTTAAGTCTTATTCACCTCCTGAAAGCCCAGCTGAGAGGAGCAAGACTCCTGAAAATGACACGACAGACGTCGATGTTGAAGGCGTAGAACCTAAGAGGGAAGAATCGCCACCGCAGCTAGTATCACCACCTTTGGCGTTCCCCATGCCCGTTCACCCGCAGCATAGCAATTTAATCGATGCCATGTACAGGCCTCGATTCCCATCATTCCACACTTCCGAATCACTTCTGAACTCGTCGCACTCTCCTTATGTACCGAGTCCGTTCAATTTTTTATCCCCACTTCTCGGTACTGATGGACCCGATAGGCAACAAAGCGCGTATGCTAAGTTTCAAGAGCTTAGTTCAGGGTCAGGAAAGCTGCGTGATCGGTACGCTTGCAAGTTCTGTGGAAAAGTGTTCCCGCGGAGTGCGAACCTGACTCGTCACCTACGTACACACACTGGCGAGCAACCCTACAAGTGCAAGTACTGTGAGCGCTCGTTCTCGATCTCGTCGAACCTTCAGCGGCACGTGAGGAATATTCACAACAAGGAGCGGCCATTTCGGTGTCCCTTGTGCGAAAGATGTTTCGGGCAGCAGACGAATCTCGACCGTCACTTGAAGAAGCACGAGGCGGAAGGTGGAGATTCTCCTAGCTCAGCGGATACTGAGAGGGAGGATGCGTATTTTGATGATATTCGGTCGTTCATGGGTAAAGTGACGTGTTCCCCTGGCGCGCGGTCACCGGCAGCGACGCCCCCGCACGGCGCGCACGGGGCTCACGGGGCGCACGGGGCGCACGGGGCCCACGCCGCGCACGGCCCGCGCCCTTCTCTCGCTATCTCCACATAG
Protein Sequence
MRSAADSQESGSPPPSPADSATSESAPTLVHIKQENMPPGTDVKEYYGTLDFGLSDTYLSNKFPDYGRGYLPRPLDHKSVKNEDGTKCDDLDVIRRIEDIDLILQQHSLMFKSGGIFATVNIANGTQYGPFLGLLENQPKDRRFAWEVRDKNGVSGWLDATSEKSNWLKMVRSTNYPHDVNVQPILLAGQVWYKVVREVPSGQELLLGPRTPIYLDDILSLDSKRQSSIDKFSSLASADDEEREDADIRCSFCDLPFPNIDILDRHLITEHAQPAAAFHCELCNRAYSTRVLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHAGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTAAAASVNLRGQMPQGLPQIPSLQNVGMNNPNNTNPFPMYRGPTLPLPYNTFAHYPALFSAAAAAACPPEFLSPLLFNVQGARLAMEHDMAMSNANLVSKQQEGRLSVKSMDSSNSLDDNKKPKDLDFDNKRDSYSSDRATPNKSHSLYSKQSPPSGEEASSQRRPSPVMPLSTPIAPFSFSRDEMKRKSPFNFSLKLNNNDIQGNKSLSPLPKDLSKNVIEDDKISEYSDVEEDTKKDEGDQPLDLSVSRKQNDKDSEAENDDRSFRHSVKSYSPPESPAERSKTPENDTTDVDVEGVEPKREESPPQLVSPPLAFPMPVHPQHSNLIDAMYRPRFPSFHTSESLLNSSHSPYVPSPFNFLSPLLGTDGPDRQQSAYAKFQELSSGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARSPAATPPHGAHGAHGAHGAHGAHAAHGPRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00441779;
90% Identity
iTF_00177403;
80% Identity
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